[1] "2025-04-29 20:54:24 MDT" [1] "1403" "140324" "d083" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140324a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:54:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.751" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "61 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.751" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "63 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:54:29 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:54:29 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:54:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:54:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 63 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1373 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:54:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.417 co2off = 357.97 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.59 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 83 92 0.06301623 0.06927940 0.06684227 2 85.76337 126.3319 3 2 93 99 0.06997471 0.07623762 0.07359279 2 18.63863 272.1597 4 5 100 109 0.07693293 0.08319676 0.08215323 NA 60.03016 192.9216 6 2 362 371 0.27177083 0.27803024 0.27559622 3 19.03288 274.8309 7 4 372 381 0.27872575 0.28498869 0.28255344 3 85.14958 125.8971 8 3 382 391 0.28568411 0.29194792 0.29090454 3 62.42705 210.0232 10 4 658 665 0.48048490 0.48536123 0.48361921 2 84.85866 129.4167 11 2 666 671 0.48814823 0.49163009 0.49058633 2 18.80673 274.8578 13 2 927 936 0.68919792 0.69545723 0.69302311 3 18.57856 271.4721 14 4 937 946 0.69615324 0.70241664 0.69997929 3 84.76341 131.0086 15 5 947 956 0.70311209 0.70937118 0.70832805 NA 57.67434 195.9770 16 3 957 966 0.71006701 0.71632610 0.71528291 3 62.04340 209.1394 18 4 1227 1236 0.89788079 0.90414010 0.90170587 2 84.74754 127.9512 19 2 1237 1246 0.90483565 0.91109751 0.90866102 2 18.36203 274.2856 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.216819 1.335578 -0.0022323883 -0.8044553 0.006329230 3.232523 3 1.216624 1.335343 -0.0081534579 2.1623665 0.027287517 7.501263 4 1.216264 1.335039 -0.0120424293 1.3725390 0.008529476 1.896804 6 1.208136 1.326365 -0.0005125891 -1.2177123 0.004719474 10.283875 7 1.208086 1.326282 0.0051892825 -0.3200173 0.015659025 8.155195 8 1.207878 1.326029 -0.0074637181 0.2232377 0.018581698 3.168082 10 1.208867 1.327292 -0.0046136700 2.4802838 0.020770199 4.841736 11 1.211146 1.329778 0.0024630438 -3.5164844 0.003301820 4.767101 13 1.212033 1.330831 0.0055975312 0.3957774 0.017658814 4.222487 14 1.212280 1.331102 0.0032629744 -0.4896635 0.012826884 3.661889 15 1.212579 1.331440 -0.0526195331 -1.0181940 0.037255689 1.924461 16 1.212722 1.331572 -0.0024685404 0.8264610 0.016552033 1.803942 18 1.215752 1.335011 -0.0059922496 1.6153649 0.016521359 4.721853 19 1.215819 1.335090 -0.0029600257 1.9855664 0.009807921 6.251759 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 368.865 co2l1 = 0.416 co2l0 = -0.429" [1] "co2l0 = -141.74 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "21 out of 85 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "64 out of 1190 1-min values rejected as stack air" [1] "64 out of 1190 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"