[1] "2017-04-06 03:26:42 MDT"
[1] "1403"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1403/140322.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1403/140323.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1403/140324.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1403/140325.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1403/140326.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1403/140327.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1403/140328.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1403/140329.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1403/140330.html"  
[10] "/net/www/docs/homes/stephens/GO2/1403/140331.html"  
[11] "/net/www/docs/homes/stephens/GO2/1403/140401.html"  
[12] "/net/www/docs/homes/stephens/GO2/1403/140402.html"  
[13] "/net/www/docs/homes/stephens/GO2/1403/140403.html"  
[14] "/net/www/docs/homes/stephens/GO2/1403/lmg_1403.html"
 [1] "/net/www/docs/homes/stephens/GO2/1403/140322.html"
 [2] "/net/www/docs/homes/stephens/GO2/1403/140323.html"
 [3] "/net/www/docs/homes/stephens/GO2/1403/140324.html"
 [4] "/net/www/docs/homes/stephens/GO2/1403/140325.html"
 [5] "/net/www/docs/homes/stephens/GO2/1403/140326.html"
 [6] "/net/www/docs/homes/stephens/GO2/1403/140327.html"
 [7] "/net/www/docs/homes/stephens/GO2/1403/140328.html"
 [8] "/net/www/docs/homes/stephens/GO2/1403/140329.html"
 [9] "/net/www/docs/homes/stephens/GO2/1403/140330.html"
[10] "/net/www/docs/homes/stephens/GO2/1403/140331.html"
[11] "/net/www/docs/homes/stephens/GO2/1403/140401.html"
[12] "/net/www/docs/homes/stephens/GO2/1403/140402.html"
[13] "/net/www/docs/homes/stephens/GO2/1403/140403.html"
[1] "140322" "140403"
 [1] "140322" "140323" "140324" "140325" "140326" "140327" "140328" "140329"
 [9] "140330" "140331" "140401" "140402" "140403"
[1] "000000" "999999"
[1] "140322_mr_proc.txt, 140322_cal_periods.txt, 140322_cal_param.txt,1016jogs"
[1] "140323_mr_proc.txt, 140323_cal_periods.txt, 140323_cal_param.txt,1154jogs"
[1] "140324_mr_proc.txt, 140324_cal_periods.txt, 140324_cal_param.txt,1373jogs"
[1] "140325_mr_proc.txt, 140325_cal_periods.txt, 140325_cal_param.txt,1385jogs"
[1] "140326_mr_proc.txt, 140326_cal_periods.txt, 140326_cal_param.txt,1432jogs"
[1] "140327_mr_proc.txt, 140327_cal_periods.txt, 140327_cal_param.txt,1436jogs"
[1] "140328_mr_proc.txt, 140328_cal_periods.txt, 140328_cal_param.txt,1429jogs"
[1] "140329_mr_proc.txt, 140329_cal_periods.txt, 140329_cal_param.txt,640jogs"
[1] "140330_mr_proc.txt, 140330_cal_periods.txt, 140330_cal_param.txt,1061jogs"
[1] "140331_mr_proc.txt, 140331_cal_periods.txt, 140331_cal_param.txt,1422jogs"
[1] "140401_mr_proc.txt, 140401_cal_periods.txt, 140401_cal_param.txt,1276jogs"
[1] "140402_mr_proc.txt, 140402_cal_periods.txt, 140402_cal_param.txt,1417jogs"
[1] "140403_mr_proc.txt, 140403_cal_periods.txt, 140403_cal_param.txt,978jogs"
[1] "140322" "140403" "d081"   "d093"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 03:27:05 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.815, ave o2scale2 = 0.742"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 03:27:22 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 03:27:44 MDT"
[1] "2017-04-06 03:27:50 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.45 O2 = -481.8"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.79 O2 = -548.7"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.02 O2 = -641.5"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.9 O2 = -579.2"
[1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1403 Valve transient for  Line 1 after Line 2 = 1.89 , 1.28 , 0.2 , -0.28 , -0.33 n = 2"
[1] "1403 Valve transient for  Line 1 after Cal = -0.07 , -0.06 , 0.02 , 0.02 , 0.01 n = 50"
[1] "1403 Valve transient for  Line 2 after Line 1 = 2.93 , 2.26 , 0.79 , -0.02 , -0.02 n = 1"
[1] "1403 Valve transient for  Line 2 after Cal = 0.07 , 0.07 , 0.07 , 0.07 , 0.06 n = 3"
[1] "1403 Valve transient for  Line 1 after HS = -1.46 , -0.73 , 0 , 0 , -0.01 n = 16"
[1] "1403 Valve transient for  Line 1 after MS = 0.1 , 0.07 , 0.05 , 0.04 , 0.04 n = 23"
[1] "1403 Valve transient for  Line 1 after LT = -0.32 , -0.46 , -0.65 , -0.55 , -0.35 n = 11"
[1] "1403 Valve transient for  Line 2 after HS = -1.54 , -0.85 , -0.17 , -0.17 , -0.16 n = 1"
[1] "1403 Valve transient for  Line 2 after MS = 0.21 , 0.23 , 0.24 , 0.23 , 0.21 n = 2"
[1] "1403 Valve transient for  HS after Line 1 = 1.05 , 0.54 , 0 , 0.01 , 0 n = 21"
[1] "1403 Valve transient for  HS after Line 2 = 1.31 , 0.64 , -0.02 , -0.02 , -0.01 n = 2"
[1] "1403 Valve transient for  HS after LS = 4.54 , 2.28 , 0.01 , 0 , 0 n = 20"
[1] "1403 Valve transient for  MS after LS = 1.51 , 0.76 , 0.01 , 0.01 , 0.01 n = 18"
[1] "1403 Valve transient for  MS after LT = 0.82 , 0.41 , 0.01 , 0.01 , 0 n = 6"
[1] "1403 Valve transient for  LS after Line 1 = -1.4 , -0.7 , 0 , 0 , 0 n = 24"
[1] "1403 Valve transient for  LS after Line 2 = 0.45 , 0.19 , -0.07 , -0.06 , -0.04 n = 1"
[1] "1403 Valve transient for  LS after HS = -4.37 , -2.19 , -0.02 , 0 , 0 n = 21"
[1] "1403 Valve transient for  LT after HS = -0.92 , -0.33 , 0.24 , 0.2 , 0.15 n = 9"
[1] "1403 Valve transient for  LT after LS = 0.98 , 0.62 , 0.25 , 0.21 , 0.18 n = 7"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "285 out of 2120 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "1835 out of 13884 1-min values rejected as stack air"
[1] "1683 out of 12857 Line 1 1-min values rejected as stack air"
[1] "152 out of 1027 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1403loxy.d081"
[1] "LMG1403loxy.d082"
[1] "LMG1403loxy.d083"
[1] "LMG1403loxy.d084"
[1] "LMG1403loxy.d090"
[1] "LMG1403loxy.d091"
[1] "LMG1403loxy.d092"
[1] "LMG1403loxy.d093"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.3597122
 [2,]  97.5 0.1798561
 [3,] 112.5 0.1798561
 [4,] 117.5 0.5395683
 [5,] 122.5 0.8992806
 [6,] 127.5 0.1798561
 [7,] 132.5 0.3597122
 [8,] 137.5 0.3597122
 [9,] 142.5 0.1798561
[10,] 147.5 0.1798561
[11,] 152.5 0.7194245
[12,] 157.5 0.8992806
[13,] 162.5 0.3597122
[14,] 167.5 0.1798561
[15,] 172.5 0.5395683
[16,] 177.5 0.1798561
[17,] 182.5 0.1798561
[18,] 187.5 0.1798561
[19,] 192.5 0.1798561
[20,] 197.5 0.1798561
[21,] 202.5 0.7194245
[22,] 207.5 1.6187050
[23,] 212.5 1.2589928
[24,] 217.5 0.8992806
[25,] 222.5 0.1798561
[26,] 232.5 0.1798561
[27,] 237.5 0.5395683
[28,] 242.5 0.1798561
[29,] 252.5 0.1798561
[30,] 257.5 0.3597122
[31,] 262.5 0.1798561
[32,] 267.5 0.5395683
[33,] 272.5 0.5395683
[34,] 277.5 0.3597122
[35,] 287.5 0.1798561
[36,] 292.5 0.1798561
[37,] 302.5 0.1798561
[38,] 307.5 1.4388489
[39,] 312.5 0.1798561
[40,] 317.5 0.5395683
[41,] 327.5 0.3597122
[42,] 332.5 1.0791367
[43,] 337.5 1.6187050
[44,] 342.5 1.7985612
[45,] 347.5 1.7985612
[46,] 352.5 1.4388489
[47,] 357.5 0.8992806
[48,] 362.5 0.3597122
[49,] 367.5 0.5395683
[50,] 372.5 0.7194245
[51,] 377.5 0.1798561
[52,] 382.5 0.5395683
[53,] 387.5 0.1798561
[54,] 392.5 0.1798561
[55,] 397.5 0.1798561
[56,] 402.5 0.3597122
[57,] 407.5 0.1798561
[58,] 412.5 0.1798561
[59,] 417.5 0.1798561
[60,] 422.5 0.1798561
[61,] 427.5 0.1798561
[62,] 437.5 0.1798561
[63,] 442.5 0.1798561
       [,1]      [,2]
 [1,] 127.5 0.1798561
 [2,] 142.5 0.1798561
 [3,] 152.5 0.1798561
 [4,] 202.5 0.3597122
 [5,] 207.5 1.2589928
 [6,] 212.5 3.7769784
 [7,] 217.5 3.5971223
 [8,] 222.5 1.2589928
 [9,] 227.5 0.3597122
[10,] 232.5 0.1798561
[11,] 237.5 0.5395683
[12,] 242.5 0.1798561
[13,] 247.5 0.5395683
[14,] 267.5 0.1798561
[15,] 277.5 0.3597122
[16,] 292.5 0.1798561
[17,] 297.5 0.1798561
[18,] 312.5 0.3597122
[19,] 317.5 1.0791367
[20,] 322.5 2.1582734
[21,] 327.5 1.9784173
[22,] 332.5 2.1582734
[23,] 337.5 1.6187050
[24,] 342.5 1.9784173
[25,] 347.5 2.6978417
[26,] 352.5 1.4388489
[27,] 357.5 0.7194245
[28,] 362.5 0.7194245
[29,] 367.5 0.7194245
[30,] 372.5 0.7194245
[31,] 377.5 0.7194245
[32,] 382.5 1.6187050
[33,] 387.5 0.5395683
[34,] 392.5 0.3597122
[35,] 397.5 1.2589928
[36,] 402.5 0.1798561
[37,] 407.5 0.0000000
[38,] 412.5 0.3597122
[39,] 422.5 0.3597122
[40,] 447.5 0.0000000
       [,1]      [,2]
 [1,] 207.5 2.5179856
 [2,] 212.5 3.5971223
 [3,] 217.5 0.3597122
 [4,] 312.5 0.1798561
 [5,] 322.5 0.3597122
 [6,] 327.5 2.1582734
 [7,] 332.5 1.0791367
 [8,] 337.5 0.3597122
 [9,] 342.5 0.8992806
[10,] 347.5 1.0791367
[11,] 352.5 2.3381295
[12,] 357.5 1.4388489
[13,] 362.5 2.3381295
[14,] 367.5 4.1366906
[15,] 372.5 1.0791367
[16,] 377.5 0.3597122
[17,] 382.5 0.5395683
      [,1]      [,2]
[1,] 357.5 0.1798561
[2,] 362.5 0.1798561
[3,] 367.5 3.7769784
[4,] 372.5 2.3381295
[5,] 377.5 0.5395683
[1] "making cruise html"
[1] "2017-04-06 03:28:16 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"