[1] "2025-04-29 20:50:17 MDT" [1] "1402" "140315" "d074" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140315a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 66120 63 [1] 66120 [1] 66120 [1] "testing skipping spike filter" [1] 66120 [1] 66120 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:50:20 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.803, ave o2scale2 = 0.732" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "5 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.803, ave o2scale2 = 0.732" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "5 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:50:21 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:50:21 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:50:33 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:50:34 MDT" [1] "reading in recalculated plot titles" [1] "Removed 5 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with low FLWTA" [1] "TEMP: 1094 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:50:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.426 co2off = 379.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.05 minutes" [1] "Average Cal: 9.04 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 155 164 0.3419838 0.3482435 0.3458094 3 -7.359875 298.5445 1.246195 3 4 165 174 0.3489389 0.3552030 0.3527685 3 57.697258 162.6274 1.246138 4 3 175 184 0.3558984 0.3621644 0.3611213 3 35.399641 244.3348 1.246217 6 4 453 462 0.5505521 0.5568451 0.5543981 2 57.705336 158.4166 1.246659 7 2 463 472 0.5575443 0.5638348 0.5613885 2 -7.336031 305.1077 1.246674 8 5 473 482 0.5645339 0.5708218 0.5697743 NA 31.023625 222.8934 1.246634 10 2 751 760 0.7594900 0.7657819 0.7633373 3 -7.074305 303.3866 1.245043 11 4 761 770 0.7664804 0.7727640 0.7703201 3 57.648773 161.1832 1.244863 12 3 771 780 0.7734630 0.7797465 0.7786996 3 35.454391 240.3580 1.244858 14 4 1050 1059 0.9683573 0.9746448 0.9721992 2 57.675586 158.1929 1.243533 15 2 1060 1069 0.9753437 0.9816296 0.9791855 2 -6.971125 300.9860 1.243747 jfcv2 co2slp o2slp co2sd o2sd 2 1.366528 -0.0096873736 0.6255426 0.024676523 3.0785592 3 1.366408 0.0092484655 -0.3086245 0.024789931 2.6240073 4 1.366494 -0.0018915394 -0.1148556 0.006649613 0.9232975 6 1.367093 -0.0068039903 -1.2365802 0.020022001 5.8945145 7 1.367088 0.0069730423 1.1786681 0.021214282 3.5326423 8 1.367036 -0.0363214197 1.8409684 0.025809398 4.9369917 10 1.365214 -0.0086172168 0.9252182 0.021657604 4.8699192 11 1.365038 0.0091891923 1.6566325 0.029284567 4.3365334 12 1.365021 -0.0028952707 -5.2177591 0.007510465 6.7834920 14 1.363535 -0.0004976121 1.1896323 0.005767630 4.0262581 15 1.363788 -0.0009791275 1.6996846 0.005400789 4.6620731 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.702 co2l1 = 0.426 co2l0 = 0.044" [1] "co2l0 = -149.67 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "85 out of 140 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "55 out of 937 1-min values rejected as stack air" [1] "55 out of 937 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"