[1] "2025-04-29 20:49:41 MDT" [1] "1402" "140314" "d073" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140314a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:49:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.811, ave o2scale2 = 0.739" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.811, ave o2scale2 = 0.739" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:49:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:49:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:50:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:50:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:50:13 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.434 co2off = 379.4 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 126 135 0.08942303 0.0956991 0.0932554 3 -5.607203 306.0267 3 4 136 145 0.09639470 0.1026955 0.1002610 3 57.473188 163.4076 4 3 146 155 0.10339083 0.1096505 0.1086071 3 35.813305 247.2497 6 4 426 435 0.29818174 0.3044413 0.3020071 2 57.452375 162.1006 7 2 436 445 0.30513672 0.3113977 0.3089628 2 -5.748117 305.5636 8 5 446 455 0.31209311 0.3183528 0.3173096 NA 31.618375 223.5152 10 2 726 735 0.50687506 0.5131347 0.5107006 3 -6.082984 305.0255 11 4 736 745 0.51383012 0.5200937 0.5176588 3 57.575320 163.9384 12 3 746 755 0.52078877 0.5270486 0.5260052 3 35.801117 238.3463 14 4 1026 1035 0.71590292 0.7221631 0.7197288 2 57.644000 164.1714 15 2 1036 1045 0.72285839 0.7291180 0.7266835 2 -6.553234 306.4457 17 2 1326 1335 0.92460532 0.9308647 0.9284304 3 -7.035594 309.3682 18 4 1336 1345 0.93156016 0.9378192 0.9353850 3 57.658063 163.0837 19 5 1346 1355 0.93851455 0.9447739 0.9437308 NA 31.091656 227.8160 20 3 1356 1365 0.94546924 0.9517290 0.9506857 3 35.491359 241.8330 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.224941 1.345867 -0.0010924906 -0.1700398 0.008869575 3.6584946 3 1.224874 1.345788 0.0001676828 1.8809961 0.018558877 6.7658929 4 1.224959 1.345891 -0.0014627777 0.7160511 0.006061758 1.9905164 6 1.227918 1.348996 -0.0005066789 0.6000598 0.009738833 2.4051324 7 1.228019 1.349094 -0.0107789767 1.0254524 0.027338720 3.2355347 8 1.228014 1.349074 -0.0357009112 -0.4760064 0.025279067 0.9593536 10 1.232609 1.353978 0.0034337823 1.3413108 0.009651618 4.2373422 11 1.232909 1.354283 0.0069819256 2.0650210 0.020687256 7.4516290 12 1.232930 1.354337 0.0015249494 -4.6149471 0.008677598 6.1272474 14 1.237094 1.358817 -0.0084833671 1.8857509 0.024129788 5.8406336 15 1.237409 1.359141 -0.0029356146 1.8836382 0.010056356 5.4011164 17 1.242782 1.365197 0.0032886175 4.0651112 0.010830729 13.0105939 18 1.242920 1.365351 0.0076550484 1.0409418 0.024182781 3.2225459 19 1.243043 1.365470 -0.0544875796 -0.2955986 0.038581514 2.9299000 20 1.243406 1.365871 -0.0012108876 -4.1303746 0.004727360 5.3451074 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.335 co2l1 = 0.433 co2l0 = 0.033" [1] "co2l0 = -150 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "167 out of 462 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "295 out of 1227 1-min values rejected as stack air" [1] "295 out of 1227 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"