[1] "2025-04-29 20:46:43 MDT" [1] "1402" "140308" "d067" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140308a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 43320 63 [1] 43320 [1] 43320 [1] "testing skipping spike filter" [1] 43320 [1] 43320 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:46:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.824, ave o2scale2 = 0.75" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "26 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.824, ave o2scale2 = 0.75" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "26 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:46:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:46:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:46:53 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:46:54 MDT" [1] "reading in recalculated plot titles" [1] "Removed 26 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with low FLWTA" [1] "TEMP: 693 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:46:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -475.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -542" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -633.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.444 co2off = 378.8 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 211 220 0.6631813 0.6694408 0.6670065 3 -4.936133 301.5435 1.215007 3 4 221 230 0.6701361 0.6763992 0.6739644 3 57.590656 158.7047 1.214886 4 5 231 240 0.6770945 0.6833576 0.6823137 NA 32.263969 224.2405 1.214823 5 3 241 250 0.6840531 0.6903120 0.6892689 3 36.246133 230.0679 1.214753 9 4 510 519 0.8718507 0.8781097 0.8756755 2 57.423562 160.9895 1.212176 10 2 520 529 0.8788056 0.8850647 0.8826304 2 -4.620937 304.2925 1.212511 jfcv2 co2slp o2slp co2sd o2sd 2 1.335017 0.001727416 2.3298861 0.00651256 7.372331 3 1.334873 0.010719272 4.1032492 0.02767378 14.955327 4 1.334811 -0.034383060 0.2401766 0.02435099 3.963412 5 1.334726 -0.002621769 -9.8304744 0.01053266 13.166384 9 1.331904 0.007007227 0.5787912 0.01877629 2.886613 10 1.332248 -0.003157334 0.5967721 0.01092410 5.312075 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.755 co2l1 = 0.443 co2l0 = 0.016" [1] "co2l0 = -148.99 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "30 out of 250 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "220 out of 610 1-min values rejected as stack air" [1] "175 out of 211 Line 1 1-min values rejected as stack air" [1] "45 out of 399 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"