[1] "2025-04-29 20:41:21 MDT" [1] "1402" "140226" "d057" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140226a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:41:25 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.818, ave o2scale2 = 0.745" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.818, ave o2scale2 = 0.745" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:41:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:41:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:41:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:41:42 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1431 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:41:47 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -475.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -542" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -633.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.439 co2off = 383.69 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.04 minutes" [1] "Average Cal: 8.75 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 6 0.001405671 0.004883102 0.003839728 2 58.957828 162.2917 2 2 7 16 0.005578530 0.011837963 0.009403751 2 -5.033805 301.0339 3 5 17 26 0.012533536 0.018796296 0.017753053 NA 32.695344 223.5349 5 2 295 304 0.206979514 0.213242679 0.210806160 3 -4.487031 301.7633 6 4 305 314 0.213938137 0.220203704 0.217768645 3 58.765383 163.4426 7 3 315 324 0.220899306 0.227159115 0.226115509 3 37.090906 242.0313 9 4 595 604 0.415877315 0.422167882 0.419726074 2 58.669633 160.1454 10 2 605 614 0.422865741 0.429144618 0.426702861 2 -4.294969 301.7506 12 2 894 903 0.624637847 0.630919126 0.628476421 3 -4.069422 305.2940 13 4 904 913 0.631617506 0.637897772 0.635454962 3 58.575281 158.7261 14 5 914 923 0.638595428 0.644876591 0.643829615 NA 33.205500 225.5516 15 3 924 933 0.645575058 0.651857784 0.650811458 3 37.107922 240.9664 17 4 1193 1202 0.833316030 0.839598380 0.837155668 2 58.523164 158.9306 18 2 1203 1212 0.840296441 0.846576042 0.844133941 2 -4.010219 302.4677 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.231935 1.352298 5.803197e-04 4.86742451 0.001455391 6.8757981 2 1.231833 1.352217 3.224650e-03 2.38286486 0.013881451 6.7194338 3 1.231436 1.351775 -4.411398e-02 0.32020795 0.031245281 0.7922231 5 1.225838 1.345721 4.062499e-03 0.12457994 0.012115055 2.3223151 6 1.225462 1.345288 9.846873e-05 0.16593993 0.009226348 2.8140862 7 1.225288 1.345137 7.738399e-04 2.13285600 0.009372440 2.9180827 9 1.222596 1.342209 1.939482e-03 1.59644477 0.006050240 4.6802601 10 1.222596 1.342215 9.714338e-04 1.24204242 0.008813988 3.9561281 12 1.220159 1.339605 -4.555998e-03 2.33363241 0.012321346 8.3627947 13 1.220040 1.339407 5.575852e-03 2.95825366 0.014384818 8.1057295 14 1.220191 1.339535 -3.631991e-02 -0.57073373 0.025809398 1.0911788 15 1.220306 1.339648 -2.697212e-03 0.10943904 0.008456939 2.1406032 17 1.219852 1.339213 4.900321e-03 1.72601558 0.014609154 4.3440819 18 1.219962 1.339322 -2.066103e-03 -0.06079268 0.007150409 2.0444570 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.553 co2l1 = 0.438 co2l0 = 0.01" [1] "co2l0 = -149.82 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 15 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1245 1-min values rejected as stack air" [1] "0 out of 1245 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"