[1] "2025-04-29 20:38:32 MDT" [1] "1402" "140221" "d052" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140221a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:38:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.819, ave o2scale2 = 0.746" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.819, ave o2scale2 = 0.746" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:38:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:38:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:38:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:38:57 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:39:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -475.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -542" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -633.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.432 co2off = 383.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.48 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 2 4 [2,] 5 6 [3,] 7 10 [4,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 5 4 13 0.003426042 0.009688802 0.00864553 NA 34.584281 224.5261 4 2 284 293 0.198253270 0.204512355 0.20207814 3 -3.266523 302.7410 5 4 294 303 0.205207841 0.211467593 0.20903323 3 60.605516 160.5910 6 3 304 313 0.212163252 0.218422512 0.21737948 3 38.749742 241.3093 8 4 584 593 0.406956510 0.413222338 0.41078640 2 60.565391 157.2886 9 2 594 603 0.413917853 0.420177228 0.41774312 2 -3.453328 304.3322 11 2 884 893 0.615659751 0.621919444 0.61948527 3 -3.461023 304.3154 12 4 894 903 0.622614844 0.628874826 0.62644023 3 60.480742 161.0829 13 5 904 913 0.629571759 0.635834925 0.63479184 NA 34.185250 223.7345 14 3 914 923 0.636530353 0.642790017 0.64174672 3 38.485578 243.8581 16 4 1184 1193 0.824350810 0.830613831 0.82817694 2 60.436437 160.6322 17 2 1194 1203 0.831309259 0.837569068 0.83513447 2 -3.838250 303.8074 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.217861 1.337439 -0.0475011444 3.2250353 0.033631766 4.3447760 4 1.218061 1.337585 0.0068354085 1.8464933 0.017485770 5.7182988 5 1.218045 1.337576 0.0019773298 2.7812491 0.015319432 7.0201064 6 1.218126 1.337674 0.0008163149 0.3952519 0.007106055 0.7773096 8 1.219327 1.339055 -0.0022686605 1.8419623 0.009295841 4.8016556 9 1.219608 1.339355 0.0038115592 1.7923015 0.013605398 5.7689094 11 1.222070 1.341897 -0.0032710118 1.2298944 0.008283680 3.3631755 12 1.222137 1.341973 0.0032235153 1.7493989 0.013306628 4.6125699 13 1.222333 1.342195 -0.0501810011 1.3438099 0.035532116 2.7294243 14 1.222452 1.342317 -0.0024501644 1.3572828 0.017586798 2.0913575 16 1.224766 1.344859 -0.0016049703 1.4438938 0.007487937 4.0051569 17 1.224909 1.345066 -0.0048409108 1.9241390 0.015583588 5.3524773 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.156 co2l1 = 0.431 co2l0 = -0.002" [1] "co2l0 = -149.11 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "93 out of 225 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "132 out of 1263 1-min values rejected as stack air" [1] "132 out of 1263 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"