[1] "2025-04-29 20:36:53 MDT" [1] "1402" "140218" "d049" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140218a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:36:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.737" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.737" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:36:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:36:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:37:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:37:17 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1433 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:37:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -475.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -542" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -633.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.419 co2off = 378.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 96 105 0.06755142 0.07381348 0.07137928 2 63.138844 157.9254 3 2 106 115 0.07450885 0.08076811 0.07833389 2 -3.462719 303.2432 7 2 394 403 0.27616785 0.28242717 0.27999301 3 -3.404211 303.5947 8 4 404 413 0.28312300 0.28938302 0.28694871 3 62.907414 158.8668 9 3 414 423 0.29007844 0.29634144 0.29529803 3 40.152148 237.2843 11 4 693 702 0.48487153 0.49113105 0.48869698 2 62.745734 158.0370 12 2 703 712 0.49182645 0.49809230 0.49565596 2 -3.199094 305.7350 13 5 713 722 0.49878773 0.50504745 0.50400420 NA 35.951375 228.9179 15 2 993 1002 0.69355229 0.69981201 0.69737760 3 -3.148500 305.6735 16 4 1003 1012 0.70050732 0.70676626 0.70433235 3 62.454102 157.9636 17 3 1013 1022 0.70746181 0.71372106 0.71267799 3 39.939430 242.5237 19 4 1293 1302 0.90223380 0.90849656 0.90606270 2 62.339352 161.3524 20 2 1303 1312 0.90919213 0.91545486 0.91302066 2 -3.196328 304.6288 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.238546 1.359521 0.0020295562 1.9630946 0.009120902 5.401330 3 1.238618 1.359595 -0.0051051548 2.4237684 0.013316167 6.357817 7 1.236383 1.357189 0.0010097997 0.3167569 0.005476098 4.253363 8 1.236100 1.356896 0.0088444533 0.4419570 0.023624502 5.334873 9 1.236076 1.356818 0.0009062264 0.5572038 0.010320908 2.340781 11 1.234732 1.355333 -0.0074287650 0.4282297 0.023851376 7.602478 12 1.234823 1.355471 -0.0017699168 0.7785265 0.007069489 4.717612 13 1.234708 1.355335 -0.0409351860 -1.4299162 0.028991378 2.740465 15 1.234648 1.355258 -0.0018689518 0.4351040 0.006597652 2.553228 16 1.234507 1.355173 0.0034425459 0.6146376 0.011571687 1.904352 17 1.234431 1.355104 -0.0012429848 -0.6978673 0.004872417 1.738079 19 1.235089 1.355790 -0.0008536149 1.6441111 0.004556801 4.786607 20 1.235204 1.355924 0.0006134290 1.1344627 0.003851274 4.539090 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.011 co2l1 = 0.418 co2l0 = -0.005" [1] "co2l0 = -148.37 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "166 out of 530 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "364 out of 1243 1-min values rejected as stack air" [1] "321 out of 1127 Line 1 1-min values rejected as stack air" [1] "43 out of 116 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"