[1] "2017-04-06 03:12:32 MDT"
[1] "1402"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1402/140214.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1402/140215.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1402/140216.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1402/140217.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1402/140218.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1402/140219.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1402/140220.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1402/140221.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1402/140222.html"  
[10] "/net/www/docs/homes/stephens/GO2/1402/140223.html"  
[11] "/net/www/docs/homes/stephens/GO2/1402/140224.html"  
[12] "/net/www/docs/homes/stephens/GO2/1402/140225.html"  
[13] "/net/www/docs/homes/stephens/GO2/1402/140226.html"  
[14] "/net/www/docs/homes/stephens/GO2/1402/140227.html"  
[15] "/net/www/docs/homes/stephens/GO2/1402/140228.html"  
[16] "/net/www/docs/homes/stephens/GO2/1402/140301.html"  
[17] "/net/www/docs/homes/stephens/GO2/1402/140302.html"  
[18] "/net/www/docs/homes/stephens/GO2/1402/140303.html"  
[19] "/net/www/docs/homes/stephens/GO2/1402/140304.html"  
[20] "/net/www/docs/homes/stephens/GO2/1402/140305.html"  
[21] "/net/www/docs/homes/stephens/GO2/1402/140306.html"  
[22] "/net/www/docs/homes/stephens/GO2/1402/140307.html"  
[23] "/net/www/docs/homes/stephens/GO2/1402/140308.html"  
[24] "/net/www/docs/homes/stephens/GO2/1402/140309.html"  
[25] "/net/www/docs/homes/stephens/GO2/1402/140310.html"  
[26] "/net/www/docs/homes/stephens/GO2/1402/140311.html"  
[27] "/net/www/docs/homes/stephens/GO2/1402/140312.html"  
[28] "/net/www/docs/homes/stephens/GO2/1402/140313.html"  
[29] "/net/www/docs/homes/stephens/GO2/1402/140314.html"  
[30] "/net/www/docs/homes/stephens/GO2/1402/140315.html"  
[31] "/net/www/docs/homes/stephens/GO2/1402/140316.html"  
[32] "/net/www/docs/homes/stephens/GO2/1402/lmg_1402.html"
 [1] "/net/www/docs/homes/stephens/GO2/1402/140214.html"
 [2] "/net/www/docs/homes/stephens/GO2/1402/140215.html"
 [3] "/net/www/docs/homes/stephens/GO2/1402/140216.html"
 [4] "/net/www/docs/homes/stephens/GO2/1402/140217.html"
 [5] "/net/www/docs/homes/stephens/GO2/1402/140218.html"
 [6] "/net/www/docs/homes/stephens/GO2/1402/140219.html"
 [7] "/net/www/docs/homes/stephens/GO2/1402/140220.html"
 [8] "/net/www/docs/homes/stephens/GO2/1402/140221.html"
 [9] "/net/www/docs/homes/stephens/GO2/1402/140222.html"
[10] "/net/www/docs/homes/stephens/GO2/1402/140223.html"
[11] "/net/www/docs/homes/stephens/GO2/1402/140224.html"
[12] "/net/www/docs/homes/stephens/GO2/1402/140225.html"
[13] "/net/www/docs/homes/stephens/GO2/1402/140226.html"
[14] "/net/www/docs/homes/stephens/GO2/1402/140227.html"
[15] "/net/www/docs/homes/stephens/GO2/1402/140228.html"
[16] "/net/www/docs/homes/stephens/GO2/1402/140301.html"
[17] "/net/www/docs/homes/stephens/GO2/1402/140302.html"
[18] "/net/www/docs/homes/stephens/GO2/1402/140303.html"
[19] "/net/www/docs/homes/stephens/GO2/1402/140304.html"
[20] "/net/www/docs/homes/stephens/GO2/1402/140305.html"
[21] "/net/www/docs/homes/stephens/GO2/1402/140306.html"
[22] "/net/www/docs/homes/stephens/GO2/1402/140307.html"
[23] "/net/www/docs/homes/stephens/GO2/1402/140308.html"
[24] "/net/www/docs/homes/stephens/GO2/1402/140309.html"
[25] "/net/www/docs/homes/stephens/GO2/1402/140310.html"
[26] "/net/www/docs/homes/stephens/GO2/1402/140311.html"
[27] "/net/www/docs/homes/stephens/GO2/1402/140312.html"
[28] "/net/www/docs/homes/stephens/GO2/1402/140313.html"
[29] "/net/www/docs/homes/stephens/GO2/1402/140314.html"
[30] "/net/www/docs/homes/stephens/GO2/1402/140315.html"
[31] "/net/www/docs/homes/stephens/GO2/1402/140316.html"
[1] "140214" "140316"
 [1] "140214" "140215" "140216" "140217" "140218" "140219" "140220" "140221"
 [9] "140222" "140223" "140224" "140225" "140226" "140227" "140228" "140301"
[17] "140302" "140303" "140304" "140305" "140306" "140307" "140308" "140309"
[25] "140310" "140311" "140312" "140313" "140314" "140315" "140316"
[1] "000000" "999999"
[1] "Output file empty for 140214"
[1] "140215_mr_proc.txt, 140215_cal_periods.txt, 140215_cal_param.txt,674jogs"
[1] "140216_mr_proc.txt, 140216_cal_periods.txt, 140216_cal_param.txt,1424jogs"
[1] "140217_mr_proc.txt, 140217_cal_periods.txt, 140217_cal_param.txt,1436jogs"
[1] "140218_mr_proc.txt, 140218_cal_periods.txt, 140218_cal_param.txt,1433jogs"
[1] "140219_mr_proc.txt, 140219_cal_periods.txt, 140219_cal_param.txt,1433jogs"
[1] "140220_mr_proc.txt, 140220_cal_periods.txt, 140220_cal_param.txt,1434jogs"
[1] "140221_mr_proc.txt, 140221_cal_periods.txt, 140221_cal_param.txt,1436jogs"
[1] "140222_mr_proc.txt, 140222_cal_periods.txt, 140222_cal_param.txt,1421jogs"
[1] "140223_mr_proc.txt, 140223_cal_periods.txt, 140223_cal_param.txt,1373jogs"
[1] "140224_mr_proc.txt, 140224_cal_periods.txt, 140224_cal_param.txt,1376jogs"
[1] "140225_mr_proc.txt, 140225_cal_periods.txt, 140225_cal_param.txt,1406jogs"
[1] "140226_mr_proc.txt, 140226_cal_periods.txt, 140226_cal_param.txt,1431jogs"
[1] "140227_mr_proc.txt, 140227_cal_periods.txt, 140227_cal_param.txt,1434jogs"
[1] "140228_mr_proc.txt, 140228_cal_periods.txt, 140228_cal_param.txt,1432jogs"
[1] "140301_mr_proc.txt, 140301_cal_periods.txt, 140301_cal_param.txt,1394jogs"
[1] "140302_mr_proc.txt, 140302_cal_periods.txt, 140302_cal_param.txt,1427jogs"
[1] "140303_mr_proc.txt, 140303_cal_periods.txt, 140303_cal_param.txt,1332jogs"
[1] "140304_mr_proc.txt, 140304_cal_periods.txt, 140304_cal_param.txt,1214jogs"
[1] "140305_mr_proc.txt, 140305_cal_periods.txt, 140305_cal_param.txt,1368jogs"
[1] "140306_mr_proc.txt, 140306_cal_periods.txt, 140306_cal_param.txt,1150jogs"
[1] "140307_mr_proc.txt, 140307_cal_periods.txt, 140307_cal_param.txt,1355jogs"
[1] "140308_mr_proc.txt, 140308_cal_periods.txt, 140308_cal_param.txt,693jogs"
[1] "140309_mr_proc.txt, 140309_cal_periods.txt, 140309_cal_param.txt,1399jogs"
[1] "140310_mr_proc.txt, 140310_cal_periods.txt, 140310_cal_param.txt,1404jogs"
[1] "140311_mr_proc.txt, 140311_cal_periods.txt, 140311_cal_param.txt,1403jogs"
[1] "140312_mr_proc.txt, 140312_cal_periods.txt, 140312_cal_param.txt,1292jogs"
[1] "140313_mr_proc.txt, 140313_cal_periods.txt, 140313_cal_param.txt,1430jogs"
[1] "140314_mr_proc.txt, 140314_cal_periods.txt, 140314_cal_param.txt,1434jogs"
[1] "140315_mr_proc.txt, 140315_cal_periods.txt, 140315_cal_param.txt,1094jogs"
[1] "140316_mr_proc.txt, 140316_cal_periods.txt, 140316_cal_param.txt,127jogs"
[1] "140214" "140316" "d045"   "d075"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 03:14:41 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.816, ave o2scale2 = 0.743"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 03:15:19 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 03:16:12 MDT"
[1] "2017-04-06 03:16:24 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.45 O2 = -481.6"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.79 O2 = -548.8"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.02 O2 = -641.3"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.9 O2 = -579.1"
[1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.15 O2 = -1145.4"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.32 O2 = -763"
[1] "Plotting jog shapes"
[1] "1402 Valve transient for  Line 1 after Line 2 = 0.12 , 0.39 , 0.12 , 0.22 , 0.43 n = 7"
[1] "1402 Valve transient for  Line 1 after Cal = -0.1 , -0.15 , -0.01 , -0.02 , -0.02 n = 117"
[1] "1402 Valve transient for  Line 2 after Line 1 = 3.92 , 2.94 , 0.96 , -0.19 , -0.18 n = 8"
[1] "1402 Valve transient for  Line 2 after Cal = 0 , -0.02 , 0.04 , 0.03 , 0.03 n = 3"
[1] "1402 Valve transient for  Line 1 after HS = -1.41 , -0.71 , -0.01 , -0.01 , -0.01 n = 39"
[1] "1402 Valve transient for  Line 1 after MS = 0.13 , 0.07 , 0.02 , 0 , 0 n = 60"
[1] "1402 Valve transient for  Line 1 after LT = -0.27 , -0.28 , -0.46 , -0.43 , -0.22 n = 18"
[1] "1402 Valve transient for  Line 2 after HS = -0.9 , -0.44 , 0.09 , 0.15 , 0.12 n = 1"
[1] "1402 Valve transient for  Line 2 after MS = 0.03 , 0.01 , -0.01 , -0.02 , -0.03 n = 2"
[1] "1402 Valve transient for  Line 2 after LT = -0.42 , -0.52 , -0.66 , -0.58 , -0.29 n = 2"
[1] "1402 Valve transient for  HS after Line 1 = 1.03 , 0.52 , 0 , 0 , 0 n = 53"
[1] "1402 Valve transient for  HS after Line 2 = 1.15 , 0.58 , -0.01 , -0.01 , -0.01 n = 6"
[1] "1402 Valve transient for  HS after LS = 4.5 , 2.26 , 0.01 , 0 , 0 n = 56"
[1] "1402 Valve transient for  MS after LS = 1.5 , 0.75 , 0.01 , 0 , 0 n = 39"
[1] "1402 Valve transient for  MS after LT = 0.8 , 0.4 , 0.01 , 0 , 0 n = 19"
[1] "1402 Valve transient for  LS after Line 1 = -1.48 , -0.74 , 0 , 0 , 0 n = 52"
[1] "1402 Valve transient for  LS after Line 2 = -1.42 , -0.71 , 0 , 0.01 , 0 n = 5"
[1] "1402 Valve transient for  LS after HS = -4.36 , -2.19 , -0.02 , -0.01 , 0 n = 59"
[1] "1402 Valve transient for  LT after HS = -0.87 , -0.3 , 0.25 , 0.2 , 0.16 n = 16"
[1] "1402 Valve transient for  LT after LS = 1.05 , 0.67 , 0.27 , 0.22 , 0.18 n = 20"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "701 out of 8220 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "7519 out of 33519 1-min values rejected as stack air"
[1] "6910 out of 31066 Line 1 1-min values rejected as stack air"
[1] "609 out of 2453 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1402loxy.d045"
[1] "LMG1402loxy.d046"
[1] "LMG1402loxy.d047"
[1] "LMG1402loxy.d048"
[1] "LMG1402loxy.d050"
[1] "LMG1402loxy.d051"
[1] "LMG1402loxy.d052"
[1] "LMG1402loxy.d053"
[1] "LMG1402loxy.d054"
[1] "LMG1402loxy.d055"
[1] "LMG1402loxy.d056"
[1] "LMG1402loxy.d060"
[1] "LMG1402loxy.d061"
[1] "LMG1402loxy.d062"
[1] "LMG1402loxy.d063"
[1] "LMG1402loxy.d064"
[1] "LMG1402loxy.d065"
[1] "LMG1402loxy.d066"
[1] "LMG1402loxy.d069"
[1] "LMG1402loxy.d070"
[1] "LMG1402loxy.d071"
[1] "LMG1402loxy.d072"
[1] "LMG1402loxy.d073"
[1] "LMG1402loxy.d074"
[1] "LMG1402loxy.d075"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.2173913
 [2,]  97.5 0.2173913
 [3,] 102.5 0.1086957
 [4,] 107.5 0.8695652
 [5,] 112.5 0.1086957
 [6,] 117.5 0.1086957
 [7,] 127.5 0.3260870
 [8,] 132.5 0.1086957
 [9,] 137.5 0.2173913
[10,] 142.5 0.1086957
[11,] 147.5 0.4347826
[12,] 152.5 0.3260870
[13,] 157.5 0.6521739
[14,] 162.5 0.3260870
[15,] 167.5 0.5434783
[16,] 172.5 0.2173913
[17,] 177.5 0.1086957
[18,] 182.5 0.4347826
[19,] 187.5 0.2173913
[20,] 192.5 0.3260870
[21,] 197.5 0.1086957
[22,] 202.5 0.2173913
[23,] 207.5 0.4347826
[24,] 212.5 0.1086957
[25,] 217.5 0.3260870
[26,] 222.5 0.4347826
[27,] 227.5 0.3260870
[28,] 232.5 0.5434783
[29,] 237.5 0.5434783
[30,] 242.5 0.7608696
[31,] 247.5 0.4347826
[32,] 252.5 0.1086957
[33,] 257.5 0.4347826
[34,] 262.5 0.1086957
[35,] 267.5 0.1086957
[36,] 272.5 0.2173913
[37,] 277.5 0.1086957
[38,] 287.5 0.3260870
[39,] 292.5 0.2173913
[40,] 297.5 0.2173913
[41,] 302.5 0.2173913
[42,] 307.5 0.3260870
[43,] 312.5 0.3260870
[44,] 317.5 0.8695652
[45,] 322.5 0.3260870
[46,] 327.5 0.7608696
[47,] 332.5 0.9782609
[48,] 337.5 0.5434783
[49,] 342.5 0.3260870
[50,] 347.5 0.0000000
[51,] 357.5 0.1086957
[52,] 367.5 0.4347826
[53,] 372.5 0.1086957
[54,] 397.5 0.1086957
[55,] 407.5 0.2173913
[56,] 412.5 0.1086957
[57,] 417.5 0.3260870
[58,] 422.5 0.1086957
[59,] 427.5 0.3260870
[60,] 432.5 0.4347826
[61,] 437.5 0.3260870
[62,] 442.5 0.2173913
[63,] 447.5 0.2173913
       [,1]      [,2]
 [1,]  92.5 0.1086957
 [2,]  97.5 0.1086957
 [3,] 102.5 0.1086957
 [4,] 122.5 0.1086957
 [5,] 132.5 0.1086957
 [6,] 142.5 0.2173913
 [7,] 147.5 0.4347826
 [8,] 152.5 0.6521739
 [9,] 157.5 0.1086957
[10,] 162.5 0.1086957
[11,] 167.5 0.1086957
[12,] 172.5 0.1086957
[13,] 177.5 0.1086957
[14,] 182.5 0.2173913
[15,] 187.5 0.2173913
[16,] 192.5 0.3260870
[17,] 197.5 0.3260870
[18,] 202.5 0.5434783
[19,] 207.5 0.3260870
[20,] 212.5 0.4347826
[21,] 217.5 0.4347826
[22,] 222.5 0.3260870
[23,] 232.5 0.1086957
[24,] 237.5 0.2173913
[25,] 242.5 0.3260870
[26,] 247.5 0.4347826
[27,] 252.5 0.9782609
[28,] 257.5 0.7608696
[29,] 262.5 1.5217391
[30,] 267.5 1.1956522
[31,] 272.5 0.3260870
[32,] 277.5 0.6521739
[33,] 282.5 0.4347826
[34,] 287.5 0.2173913
[35,] 292.5 0.1086957
[36,] 297.5 0.1086957
[37,] 302.5 0.3260870
[38,] 307.5 0.6521739
[39,] 312.5 0.3260870
[40,] 317.5 0.8695652
[41,] 322.5 0.4347826
[42,] 327.5 0.2173913
[43,] 332.5 0.2173913
[44,] 337.5 0.4347826
[45,] 342.5 0.3260870
[46,] 347.5 0.2173913
[47,] 352.5 0.3260870
[48,] 357.5 0.1086957
[49,] 362.5 2.3913043
[50,] 367.5 2.2826087
[51,] 372.5 0.3260870
[52,] 377.5 0.3260870
[53,] 382.5 0.2173913
[54,] 422.5 0.5434783
[55,] 427.5 0.5434783
[56,] 432.5 0.1086957
[57,] 442.5 0.1086957
       [,1]      [,2]
 [1,]  92.5 0.1086957
 [2,]  97.5 0.2173913
 [3,] 102.5 0.1086957
 [4,] 112.5 0.3260870
 [5,] 117.5 0.2173913
 [6,] 122.5 0.4347826
 [7,] 127.5 0.4347826
 [8,] 132.5 0.3260870
 [9,] 137.5 0.1086957
[10,] 142.5 0.2173913
[11,] 147.5 0.2173913
[12,] 152.5 0.2173913
[13,] 157.5 0.2173913
[14,] 162.5 0.3260870
[15,] 167.5 0.3260870
[16,] 172.5 0.1086957
[17,] 177.5 0.2173913
[18,] 182.5 0.5434783
[19,] 187.5 0.1086957
[20,] 192.5 0.4347826
[21,] 197.5 0.3260870
[22,] 212.5 0.2173913
[23,] 217.5 0.2173913
[24,] 222.5 0.1086957
[25,] 227.5 0.3260870
[26,] 232.5 0.5434783
[27,] 237.5 0.4347826
[28,] 242.5 0.5434783
[29,] 247.5 0.9782609
[30,] 252.5 1.7391304
[31,] 257.5 1.3043478
[32,] 262.5 0.9782609
[33,] 267.5 1.4130435
[34,] 272.5 1.0869565
[35,] 277.5 1.6304348
[36,] 282.5 0.4347826
[37,] 287.5 0.4347826
[38,] 292.5 0.3260870
[39,] 297.5 0.2173913
[40,] 302.5 0.4347826
[41,] 307.5 0.3260870
[42,] 312.5 0.2173913
[43,] 317.5 0.4347826
[44,] 322.5 0.5434783
[45,] 327.5 0.2173913
[46,] 332.5 1.9565217
[47,] 337.5 0.4347826
[48,] 342.5 0.2173913
[49,] 347.5 1.7391304
[50,] 352.5 0.3260870
[51,] 372.5 0.3260870
[52,] 377.5 0.9782609
[53,] 382.5 1.6304348
[54,] 387.5 1.6304348
[55,] 392.5 0.4347826
[56,] 397.5 0.1086957
[57,] 402.5 0.1086957
[58,] 407.5 0.1086957
[59,] 412.5 0.2173913
[60,] 417.5 0.4347826
[61,] 427.5 0.3260870
[62,] 437.5 0.1086957
[63,] 442.5 0.1086957
[64,] 447.5 0.2173913
       [,1]      [,2]
 [1,]  92.5 0.1086957
 [2,]  97.5 0.2173913
 [3,] 102.5 0.3260870
 [4,] 107.5 0.3260870
 [5,] 112.5 0.3260870
 [6,] 117.5 0.6521739
 [7,] 122.5 0.2173913
 [8,] 127.5 0.2173913
 [9,] 132.5 0.3260870
[10,] 137.5 0.4347826
[11,] 142.5 0.1086957
[12,] 147.5 0.1086957
[13,] 152.5 0.3260870
[14,] 157.5 0.2173913
[15,] 162.5 0.5434783
[16,] 167.5 0.4347826
[17,] 172.5 0.4347826
[18,] 177.5 0.5434783
[19,] 182.5 0.5434783
[20,] 187.5 0.5434783
[21,] 197.5 0.1086957
[22,] 202.5 0.3260870
[23,] 217.5 0.2173913
[24,] 232.5 0.2173913
[25,] 237.5 0.1086957
[26,] 242.5 0.2173913
[27,] 247.5 0.1086957
[28,] 252.5 0.1086957
[29,] 257.5 0.8695652
[30,] 262.5 1.0869565
[31,] 267.5 0.8695652
[32,] 272.5 0.6521739
[33,] 277.5 0.8695652
[34,] 282.5 1.0869565
[35,] 287.5 0.2173913
[36,] 292.5 0.2173913
[37,] 297.5 0.4347826
[38,] 302.5 0.4347826
[39,] 312.5 0.1086957
[40,] 322.5 0.3260870
[41,] 327.5 0.5434783
[42,] 332.5 0.9782609
[43,] 342.5 0.1086957
[44,] 347.5 0.3260870
[45,] 352.5 0.7608696
[46,] 357.5 1.0869565
[47,] 372.5 0.3260870
[48,] 377.5 0.8695652
[49,] 382.5 0.3260870
[50,] 387.5 1.3043478
[51,] 392.5 0.3260870
[52,] 397.5 0.1086957
[53,] 402.5 0.1086957
[54,] 407.5 0.2173913
[55,] 412.5 0.1086957
[56,] 417.5 0.1086957
[57,] 422.5 0.1086957
[58,] 427.5 0.1086957
[59,] 432.5 0.1086957
[60,] 437.5 0.2173913
[61,] 442.5 0.1086957
[62,] 447.5 0.1086957
[1] "making cruise html"
[1] "2017-04-06 03:17:29 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"