[1] "2025-04-29 20:27:22 MDT" [1] "1401" "140202" "d033" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140202a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:27:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.806, ave o2scale2 = 0.733" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.806, ave o2scale2 = 0.733" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:27:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:27:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:27:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:27:45 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1414 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:27:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -475.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -542" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -633.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.452 co2off = 379.04 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 4 2 187 196 0.1316986 0.1379655 0.1355277 3 -5.317195 303.7988 1.242460 5 4 197 206 0.1386609 0.1449242 0.1424876 3 55.782141 160.5442 1.242297 6 3 207 216 0.1456196 0.1518796 0.1508359 3 34.894531 245.8199 1.242257 10 4 485 494 0.3404382 0.3466979 0.3442634 2 55.777961 155.0472 1.241287 11 2 495 504 0.3473934 0.3536591 0.3512205 2 -5.499977 302.0906 1.241323 12 5 505 514 0.3543563 0.3606184 0.3595753 NA 30.377750 226.1016 1.241376 14 2 780 789 0.5491832 0.5554464 0.5530122 3 -5.585461 303.4706 1.240585 15 4 790 799 0.5561418 0.5624089 0.5599689 3 55.880016 167.6829 1.240417 16 3 800 809 0.5631083 0.5693657 0.5683227 3 34.922656 237.1781 1.240672 18 4 1074 1083 0.7579317 0.7641910 0.7617569 2 55.847508 165.6720 1.240489 19 2 1084 1093 0.7648866 0.7711458 0.7687115 2 -4.963656 303.3201 1.240605 21 2 1367 1376 0.9666458 0.9729059 0.9704714 3 -5.187930 301.0319 1.239263 22 4 1377 1386 0.9736011 0.9798645 0.9774290 3 55.818977 156.7592 1.239228 23 5 1387 1396 0.9805598 0.9868194 0.9857761 NA 30.340187 238.2528 1.239196 24 3 1397 1406 0.9875150 0.9937761 0.9927325 3 34.798664 219.3901 1.239138 jfcv2 co2slp o2slp co2sd o2sd 4 1.365741 0.0034043027 1.6725915 0.009645643 4.808908 5 1.365579 0.0073690855 1.6559268 0.020264538 4.768733 6 1.365540 0.0045568616 0.7862101 0.012033250 1.692452 10 1.364505 0.0078138370 4.5556810 0.019308611 11.454764 11 1.364533 -0.0039886186 -0.1819935 0.017956667 6.697585 12 1.364618 -0.0297128589 1.5566736 0.021036427 4.347092 14 1.363675 0.0054283069 0.4106921 0.013820636 3.143844 15 1.363514 0.0046560217 1.4289881 0.018175046 4.053892 16 1.363813 -0.0016405247 -0.3777874 0.007295654 3.862781 18 1.363458 0.0023230961 0.8168010 0.008041566 4.275045 19 1.363585 0.0060893950 -0.5878989 0.015593039 12.353375 21 1.362053 0.0001859844 -0.1888307 0.008772384 4.411709 22 1.362028 0.0041280402 3.1903137 0.018165962 8.827312 23 1.362007 -0.0455490849 -5.0244055 0.032261747 7.785127 24 1.361880 0.0031801446 1.4153687 0.015266748 6.320549 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.044 co2l1 = 0.452 co2l0 = 0.025" [1] "co2l0 = -149.63 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "90 out of 250 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "160 out of 1201 1-min values rejected as stack air" [1] "139 out of 966 Line 1 1-min values rejected as stack air" [1] "21 out of 235 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"