[1] "2025-04-29 20:19:38 MDT" [1] "1401" "140121" "d021" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140121a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85904 63 [1] 85904 [1] 85904 [1] "testing skipping spike filter" [1] 85904 [1] 85904 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:19:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.736" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "42 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.736" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "42 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:19:42 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:19:42 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:19:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:19:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 42 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1388 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:20:00 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -475.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -542.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.21 O2 = -633.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.452 co2off = 367.8 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.84 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 5 7 [4,] 8 9 [5,] 10 10 [6,] 12 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 4 13 0.00315515 0.009418895 0.00837555 1 33.889852 247.1506 4 4 279 288 0.19795718 0.204216551 0.20178237 2 54.603938 161.5558 5 2 289 298 0.20491209 0.211171672 0.20873760 2 -5.901195 302.3200 6 5 299 308 0.21186727 0.218137731 0.21709073 NA 29.376562 224.8652 8 2 579 588 0.40670255 0.412965307 0.41052881 3 -6.459672 302.4119 9 4 589 598 0.41366094 0.419935735 0.41749987 3 54.701867 161.7167 10 3 599 608 0.42063189 0.426892448 0.42584938 3 33.815672 239.1399 12 4 873 882 0.61540845 0.621667245 0.61923322 2 54.705609 161.1265 13 2 883 892 0.62236270 0.628622541 0.62618834 2 -6.606414 304.9411 17 4 1065 1072 0.77036389 0.775232089 0.77349349 1 54.704615 158.1772 18 5 1073 1082 0.77592755 0.782187240 0.78114400 NA 28.072563 227.6053 20 4 1343 1352 0.96376389 0.970023177 0.96758916 1 54.713328 162.1619 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.229834 1.352845 -0.0108016900 -1.5503994 0.026967655 2.897166 4 1.230846 1.353986 -0.0034505002 1.3391636 0.009240765 3.638541 5 1.231013 1.354166 -0.0042132959 3.9033036 0.011996625 9.795076 6 1.231070 1.354248 -0.0420549085 -2.4138078 0.029786873 3.161640 8 1.235209 1.358640 0.0063878144 2.8995557 0.016805769 7.593914 9 1.235346 1.358813 0.0053545464 1.7250118 0.022778888 5.089808 10 1.235603 1.359100 -0.0091206389 -2.0455336 0.024639992 2.704379 12 1.238352 1.361848 0.0073016845 3.2401178 0.019092899 9.966573 13 1.238539 1.362092 -0.0020917294 1.1080776 0.011777937 4.928030 17 1.240490 1.364428 0.0001267569 -2.9693231 0.004013146 10.065068 18 1.240536 1.364489 -0.0328284930 0.2926962 0.023246135 4.187049 20 1.241585 1.365461 -0.0002241923 0.3616211 0.006367270 4.200419 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.529 co2l1 = 0.452 co2l0 = 0.034" [1] "co2l0 = -150.12 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "137 out of 250 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "113 out of 1180 1-min values rejected as stack air" [1] "113 out of 1180 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"