[1] "2025-04-29 20:13:18 MDT" [1] "1401" "140110" "d010" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140110a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:13:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.798, ave o2scale2 = 0.727" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "15 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.798, ave o2scale2 = 0.727" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "15 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:13:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:13:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:13:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:13:39 MDT" [1] "reading in recalculated plot titles" [1] "Removed 15 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1421 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:13:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -475.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -542.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.21 O2 = -633.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.447 co2off = 374.28 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.76 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 259 268 0.1803947 0.1866540 0.1842198 3 -4.683328 298.4615 1.254446 3 4 269 278 0.1873496 0.1936088 0.1911748 3 56.713492 154.7347 1.254372 4 5 279 288 0.1943044 0.2005637 0.1995205 NA 30.716438 222.0235 1.254284 5 3 289 298 0.2012593 0.2075185 0.2064753 3 35.670305 238.9821 1.254191 7 4 557 566 0.3890810 0.3953441 0.3929100 2 56.702359 151.0894 1.253252 8 2 567 576 0.3960394 0.4022994 0.3998651 2 -4.951531 297.5900 1.253364 10 2 853 862 0.5978322 0.6041015 0.6016643 3 -6.116141 301.2396 1.252067 11 4 863 872 0.6047968 0.6110564 0.6086219 3 56.766305 157.2620 1.251997 12 3 873 882 0.6117518 0.6180105 0.6169676 3 35.308727 236.0243 1.252177 14 4 1152 1161 0.8065127 0.8127720 0.8103378 2 56.653547 154.2726 1.251973 15 2 1162 1168 0.8134675 0.8176400 0.8162490 2 -5.802450 295.0442 1.252045 16 5 1169 1178 0.8204217 0.8266816 0.8256383 NA 30.071406 223.9457 1.251846 jfcv2 co2slp o2slp co2sd o2sd 2 1.376733 -0.002294165 3.74405889 0.009492581 11.480395 3 1.376800 0.003177996 2.05397364 0.022298589 6.409933 4 1.376618 -0.060801531 -0.09010509 0.043045125 1.285678 5 1.376523 -0.002229850 -3.64582108 0.007479320 5.392457 7 1.375566 0.002627037 3.57812825 0.009011696 12.312659 8 1.375733 -0.001298729 1.77547765 0.010136678 5.948386 10 1.374248 0.004195718 3.25131411 0.011152241 8.376963 11 1.374114 0.008552639 1.75531461 0.024716121 5.205631 12 1.374272 -0.002998214 -3.46658732 0.011985526 4.867427 14 1.374307 -0.002168227 1.76077885 0.009799881 5.628390 15 1.374299 -0.001216417 2.80923689 0.009734503 5.684565 16 1.374211 -0.060471792 0.83247894 0.042824154 3.116382 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.032 co2l1 = 0.445 co2l0 = 0.023" [1] "co2l0 = -147.89 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "108 out of 305 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "197 out of 1257 1-min values rejected as stack air" [1] "197 out of 1257 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"