[1] "2025-04-29 20:08:22 MDT" [1] "1401" "140101" "d001" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140101a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 51300 63 [1] 51300 [1] 51300 [1] "testing skipping spike filter" [1] 51300 [1] 51300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:08:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.808, ave o2scale2 = 0.734" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "42 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.808, ave o2scale2 = 0.734" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "42 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:08:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:08:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:08:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:08:30 MDT" [1] "reading in recalculated plot titles" [1] "Removed 42 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 812 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:08:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -475.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -542.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.21 O2 = -633.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.413 co2off = 365 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 3 4 [3,] 5 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 1 4 1 8 0.4272747 0.4328387 0.4311000 1 61.643830 174.2265 1.240585 2 5 9 18 0.4335340 0.4397929 0.4387498 NA 34.920781 214.5012 1.240660 4 4 278 287 0.6213547 0.6276143 0.6251798 2 62.739219 152.6554 1.238513 5 2 288 297 0.6283097 0.6345686 0.6321346 2 -4.198430 307.3062 1.238526 7 2 571 580 0.8300660 0.8363309 0.8338941 3 -3.851359 304.1355 1.236596 8 4 581 590 0.8370300 0.8432935 0.8408594 3 63.219984 158.4023 1.236421 9 3 591 599 0.8439889 0.8502519 0.8495565 3 40.263307 238.9042 1.236743 jfcv2 co2slp o2slp co2sd o2sd 1 1.365228 0.035344841 1.7678856 0.066667491 22.528506 2 1.365099 0.036886781 1.9541013 0.026118757 11.380937 4 1.362551 0.005770865 -0.8812246 0.023704468 13.423285 5 1.362628 0.002838988 3.2784004 0.009751742 8.694101 7 1.360129 -0.009525905 1.5011424 0.025983506 3.778169 8 1.359866 0.013803429 1.3515351 0.036348999 5.304503 9 1.360240 0.002043896 2.8796393 0.005982272 2.886777 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.465 co2l1 = 0.412 co2l0 = 0.002" [1] "co2l0 = -146.14 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "192 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "38 out of 710 1-min values rejected as stack air" [1] "38 out of 710 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"