[1] "2025-04-29 20:30:43 MDT"
[1] "1401"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1401/140101.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1401/140102.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1401/140103.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1401/140104.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1401/140105.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1401/140106.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1401/140107.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1401/140108.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1401/140109.html"  
[10] "/net/www/docs/homes/stephens/GO2/1401/140110.html"  
[11] "/net/www/docs/homes/stephens/GO2/1401/140111.html"  
[12] "/net/www/docs/homes/stephens/GO2/1401/140112.html"  
[13] "/net/www/docs/homes/stephens/GO2/1401/140113.html"  
[14] "/net/www/docs/homes/stephens/GO2/1401/140114.html"  
[15] "/net/www/docs/homes/stephens/GO2/1401/140115.html"  
[16] "/net/www/docs/homes/stephens/GO2/1401/140116.html"  
[17] "/net/www/docs/homes/stephens/GO2/1401/140117.html"  
[18] "/net/www/docs/homes/stephens/GO2/1401/140118.html"  
[19] "/net/www/docs/homes/stephens/GO2/1401/140119.html"  
[20] "/net/www/docs/homes/stephens/GO2/1401/140120.html"  
[21] "/net/www/docs/homes/stephens/GO2/1401/140121.html"  
[22] "/net/www/docs/homes/stephens/GO2/1401/140122.html"  
[23] "/net/www/docs/homes/stephens/GO2/1401/140123.html"  
[24] "/net/www/docs/homes/stephens/GO2/1401/140124.html"  
[25] "/net/www/docs/homes/stephens/GO2/1401/140125.html"  
[26] "/net/www/docs/homes/stephens/GO2/1401/140126.html"  
[27] "/net/www/docs/homes/stephens/GO2/1401/140127.html"  
[28] "/net/www/docs/homes/stephens/GO2/1401/140128.html"  
[29] "/net/www/docs/homes/stephens/GO2/1401/140129.html"  
[30] "/net/www/docs/homes/stephens/GO2/1401/140130.html"  
[31] "/net/www/docs/homes/stephens/GO2/1401/140131.html"  
[32] "/net/www/docs/homes/stephens/GO2/1401/140201.html"  
[33] "/net/www/docs/homes/stephens/GO2/1401/140202.html"  
[34] "/net/www/docs/homes/stephens/GO2/1401/140203.html"  
[35] "/net/www/docs/homes/stephens/GO2/1401/140204.html"  
[36] "/net/www/docs/homes/stephens/GO2/1401/140205.html"  
[37] "/net/www/docs/homes/stephens/GO2/1401/140206.html"  
[38] "/net/www/docs/homes/stephens/GO2/1401/140207.html"  
[39] "/net/www/docs/homes/stephens/GO2/1401/lmg_1401.html"
 [1] "/net/www/docs/homes/stephens/GO2/1401/140101.html"
 [2] "/net/www/docs/homes/stephens/GO2/1401/140102.html"
 [3] "/net/www/docs/homes/stephens/GO2/1401/140103.html"
 [4] "/net/www/docs/homes/stephens/GO2/1401/140104.html"
 [5] "/net/www/docs/homes/stephens/GO2/1401/140105.html"
 [6] "/net/www/docs/homes/stephens/GO2/1401/140106.html"
 [7] "/net/www/docs/homes/stephens/GO2/1401/140107.html"
 [8] "/net/www/docs/homes/stephens/GO2/1401/140108.html"
 [9] "/net/www/docs/homes/stephens/GO2/1401/140109.html"
[10] "/net/www/docs/homes/stephens/GO2/1401/140110.html"
[11] "/net/www/docs/homes/stephens/GO2/1401/140111.html"
[12] "/net/www/docs/homes/stephens/GO2/1401/140112.html"
[13] "/net/www/docs/homes/stephens/GO2/1401/140113.html"
[14] "/net/www/docs/homes/stephens/GO2/1401/140114.html"
[15] "/net/www/docs/homes/stephens/GO2/1401/140115.html"
[16] "/net/www/docs/homes/stephens/GO2/1401/140116.html"
[17] "/net/www/docs/homes/stephens/GO2/1401/140117.html"
[18] "/net/www/docs/homes/stephens/GO2/1401/140118.html"
[19] "/net/www/docs/homes/stephens/GO2/1401/140119.html"
[20] "/net/www/docs/homes/stephens/GO2/1401/140120.html"
[21] "/net/www/docs/homes/stephens/GO2/1401/140121.html"
[22] "/net/www/docs/homes/stephens/GO2/1401/140122.html"
[23] "/net/www/docs/homes/stephens/GO2/1401/140123.html"
[24] "/net/www/docs/homes/stephens/GO2/1401/140124.html"
[25] "/net/www/docs/homes/stephens/GO2/1401/140125.html"
[26] "/net/www/docs/homes/stephens/GO2/1401/140126.html"
[27] "/net/www/docs/homes/stephens/GO2/1401/140127.html"
[28] "/net/www/docs/homes/stephens/GO2/1401/140128.html"
[29] "/net/www/docs/homes/stephens/GO2/1401/140129.html"
[30] "/net/www/docs/homes/stephens/GO2/1401/140130.html"
[31] "/net/www/docs/homes/stephens/GO2/1401/140131.html"
[32] "/net/www/docs/homes/stephens/GO2/1401/140201.html"
[33] "/net/www/docs/homes/stephens/GO2/1401/140202.html"
[34] "/net/www/docs/homes/stephens/GO2/1401/140203.html"
[35] "/net/www/docs/homes/stephens/GO2/1401/140204.html"
[36] "/net/www/docs/homes/stephens/GO2/1401/140205.html"
[37] "/net/www/docs/homes/stephens/GO2/1401/140206.html"
[38] "/net/www/docs/homes/stephens/GO2/1401/140207.html"
[1] "140101" "140207"
 [1] "140101" "140102" "140103" "140104" "140105" "140106" "140107" "140108"
 [9] "140109" "140110" "140111" "140112" "140113" "140114" "140115" "140116"
[17] "140117" "140118" "140119" "140120" "140121" "140122" "140123" "140124"
[25] "140125" "140126" "140127" "140128" "140129" "140130" "140131" "140201"
[33] "140202" "140203" "140204" "140205" "140206" "140207"
[1] "000000" "999999"
[1] "140101_mr_proc.txt, 140101_cal_periods.txt, 140101_cal_param.txt, 812 jogs"
[1] "140102_mr_proc.txt, 140102_cal_periods.txt, 140102_cal_param.txt, 1283 jogs"
[1] "140103_mr_proc.txt, 140103_cal_periods.txt, 140103_cal_param.txt, 1387 jogs"
[1] "140104_mr_proc.txt, 140104_cal_periods.txt, 140104_cal_param.txt, 1422 jogs"
[1] "140105_mr_proc.txt, 140105_cal_periods.txt, 140105_cal_param.txt, 1408 jogs"
[1] "140106_mr_proc.txt, 140106_cal_periods.txt, 140106_cal_param.txt, 1427 jogs"
[1] "140107_mr_proc.txt, 140107_cal_periods.txt, 140107_cal_param.txt, 1425 jogs"
[1] "140108_mr_proc.txt, 140108_cal_periods.txt, 140108_cal_param.txt, 1423 jogs"
[1] "140109_mr_proc.txt, 140109_cal_periods.txt, 140109_cal_param.txt, 1430 jogs"
[1] "140110_mr_proc.txt, 140110_cal_periods.txt, 140110_cal_param.txt, 1421 jogs"
[1] "140111_mr_proc.txt, 140111_cal_periods.txt, 140111_cal_param.txt, 1375 jogs"
[1] "140112_mr_proc.txt, 140112_cal_periods.txt, 140112_cal_param.txt, 1367 jogs"
[1] "140113_mr_proc.txt, 140113_cal_periods.txt, 140113_cal_param.txt, 1330 jogs"
[1] "140114_mr_proc.txt, 140114_cal_periods.txt, 140114_cal_param.txt, 1131 jogs"
[1] "140115_mr_proc.txt, 140115_cal_periods.txt, 140115_cal_param.txt, 1401 jogs"
[1] "140116_mr_proc.txt, 140116_cal_periods.txt, 140116_cal_param.txt, 1430 jogs"
[1] "140117_mr_proc.txt, 140117_cal_periods.txt, 140117_cal_param.txt, 1434 jogs"
[1] "140118_mr_proc.txt, 140118_cal_periods.txt, 140118_cal_param.txt, 1434 jogs"
[1] "140119_mr_proc.txt, 140119_cal_periods.txt, 140119_cal_param.txt, 1408 jogs"
[1] "140120_mr_proc.txt, 140120_cal_periods.txt, 140120_cal_param.txt, 1431 jogs"
[1] "140121_mr_proc.txt, 140121_cal_periods.txt, 140121_cal_param.txt, 1388 jogs"
[1] "140122_mr_proc.txt, 140122_cal_periods.txt, 140122_cal_param.txt, 1426 jogs"
[1] "140123_mr_proc.txt, 140123_cal_periods.txt, 140123_cal_param.txt, 1419 jogs"
[1] "140124_mr_proc.txt, 140124_cal_periods.txt, 140124_cal_param.txt, 1420 jogs"
[1] "140125_mr_proc.txt, 140125_cal_periods.txt, 140125_cal_param.txt, 1425 jogs"
[1] "140126_mr_proc.txt, 140126_cal_periods.txt, 140126_cal_param.txt, 1362 jogs"
[1] "140127_mr_proc.txt, 140127_cal_periods.txt, 140127_cal_param.txt, 1375 jogs"
[1] "140128_mr_proc.txt, 140128_cal_periods.txt, 140128_cal_param.txt, 1419 jogs"
[1] "140129_mr_proc.txt, 140129_cal_periods.txt, 140129_cal_param.txt, 1434 jogs"
[1] "140130_mr_proc.txt, 140130_cal_periods.txt, 140130_cal_param.txt, 1434 jogs"
[1] "140131_mr_proc.txt, 140131_cal_periods.txt, 140131_cal_param.txt, 1431 jogs"
[1] "140201_mr_proc.txt, 140201_cal_periods.txt, 140201_cal_param.txt, 1432 jogs"
[1] "140202_mr_proc.txt, 140202_cal_periods.txt, 140202_cal_param.txt, 1414 jogs"
[1] "140203_mr_proc.txt, 140203_cal_periods.txt, 140203_cal_param.txt, 1406 jogs"
[1] "140204_mr_proc.txt, 140204_cal_periods.txt, 140204_cal_param.txt, 1377 jogs"
[1] "140205_mr_proc.txt, 140205_cal_periods.txt, 140205_cal_param.txt, 1414 jogs"
[1] "140206_mr_proc.txt, 140206_cal_periods.txt, 140206_cal_param.txt, 1432 jogs"
[1] "140207_mr_proc.txt, 140207_cal_periods.txt, 140207_cal_param.txt, 1395 jogs"
[1] "140101" "140207" "d001"   "d038"  
[1] "Calculating derived concentration values"
[1] "2025-04-29 20:32:08 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.736"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2025-04-29 20:32:36 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2025-04-29 20:33:20 MDT"
[1] "2025-04-29 20:33:29 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 536 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -475.6"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -542.1"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.21 O2 = -633.7"
[1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2"
[1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5"
[1] "Plotting jog shapes"
[1] "1401 Valve transient for  Line 1 after Line 2 = 0.12 , 0.25 , 0.5 , 0.72 , 0.41 n = 6"
[1] "1401 Valve transient for  Line 1 after Cal = -0.13 , -0.18 , -0.01 , 0 , 0 n = 170"
[1] "1401 Valve transient for  Line 2 after Line 1 = -0.07 , -0.05 , 0.05 , 0.07 , 0.16 n = 5"
[1] "1401 Valve transient for  Line 2 after Cal = 0.11 , 0.02 , 0.03 , 0.04 , 0.04 n = 3"
[1] "1401 Valve transient for  Line 1 after HS = -1.44 , -0.7 , 0 , 0.01 , 0.01 n = 57"
[1] "1401 Valve transient for  Line 1 after MS = 0.12 , 0.07 , 0.02 , 0.04 , 0.04 n = 80"
[1] "1401 Valve transient for  Line 1 after LT = -0.8 , -0.92 , -1.02 , -0.84 , -0.41 n = 33"
[1] "1401 Valve transient for  Line 2 after HS = -1.08 , -0.53 , 0.03 , 0.04 , 0.04 n = 1"
[1] "1401 Valve transient for  Line 2 after MS = 0.11 , 0.1 , 0.1 , 0.12 , 0.11 n = 1"
[1] "1401 Valve transient for  Line 2 after LT = 0.49 , 0.02 , -0.68 , -0.68 , -0.21 n = 1"
[1] "1401 Valve transient for  HS after Line 1 = 1.06 , 0.53 , -0.01 , 0 , 0 n = 77"
[1] "1401 Valve transient for  HS after Line 2 = 1.02 , 0.51 , 0 , 0.01 , 0 n = 1"
[1] "1401 Valve transient for  HS after MS = -0.04 , -0.03 , -0.02 , -0.01 , -0.01 n = 1"
[1] "1401 Valve transient for  HS after LS = 4.48 , 2.25 , 0 , 0 , 0 n = 82"
[1] "1401 Valve transient for  MS after Line 1 = 0 , 0 , 0 , NA , NA n = 2"
[1] "1401 Valve transient for  MS after LS = 1.49 , 0.75 , 0.01 , 0 , 0 n = 49"
[1] "1401 Valve transient for  MS after LT = 0.77 , 0.39 , 0.01 , 0 , 0 n = 24"
[1] "1401 Valve transient for  LS after Line 1 = -1.46 , -0.73 , 0 , 0 , 0 n = 84"
[1] "1401 Valve transient for  LS after Line 2 = -1.44 , -0.72 , -0.01 , -0.01 , 0 n = 1"
[1] "1401 Valve transient for  LS after HS = -4.4 , -2.21 , -0.02 , -0.01 , 0 n = 76"
[1] "1401 Valve transient for  LS after MS = 0.01 , 0.01 , 0.01 , 0.01 , 0 n = 1"
[1] "1401 Valve transient for  LT after HS = -0.87 , -0.29 , 0.25 , 0.22 , 0.17 n = 26"
[1] "1401 Valve transient for  LT after LS = 1.13 , 0.71 , 0.27 , 0.22 , 0.17 n = 28"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "1512 out of 11665 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "10153 out of 45660 1-min values rejected as stack air"
[1] "9669 out of 44055 Line 1 1-min values rejected as stack air"
[1] "484 out of 1605 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1401loxy.d001"
[1] "LMG1401loxy.d002"
[1] "LMG1401loxy.d003"
[1] "LMG1401loxy.d004"
[1] "LMG1401loxy.d005"
[1] "LMG1401loxy.d007"
[1] "LMG1401loxy.d008"
[1] "LMG1401loxy.d009"
[1] "LMG1401loxy.d010"
[1] "LMG1401loxy.d011"
[1] "LMG1401loxy.d012"
[1] "LMG1401loxy.d013"
[1] "LMG1401loxy.d014"
[1] "LMG1401loxy.d015"
[1] "LMG1401loxy.d016"
[1] "LMG1401loxy.d017"
[1] "LMG1401loxy.d018"
[1] "LMG1401loxy.d019"
[1] "LMG1401loxy.d020"
[1] "LMG1401loxy.d021"
[1] "LMG1401loxy.d022"
[1] "LMG1401loxy.d023"
[1] "LMG1401loxy.d024"
[1] "LMG1401loxy.d025"
[1] "LMG1401loxy.d026"
[1] "LMG1401loxy.d027"
[1] "LMG1401loxy.d028"
[1] "LMG1401loxy.d029"
[1] "LMG1401loxy.d030"
[1] "LMG1401loxy.d031"
[1] "LMG1401loxy.d032"
[1] "LMG1401loxy.d033"
[1] "LMG1401loxy.d034"
[1] "LMG1401loxy.d035"
[1] "LMG1401loxy.d036"
[1] "LMG1401loxy.d037"
[1] "LMG1401loxy.d038"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.4228330
 [2,]  97.5 0.4228330
 [3,] 102.5 0.6342495
 [4,] 107.5 0.4228330
 [5,] 112.5 0.2114165
 [6,] 117.5 0.2114165
 [7,] 132.5 0.6342495
 [8,] 137.5 0.2114165
 [9,] 147.5 0.2114165
[10,] 152.5 0.2114165
[11,] 157.5 0.4228330
[12,] 162.5 0.2114165
[13,] 167.5 0.2114165
[14,] 172.5 0.2114165
[15,] 177.5 0.2114165
[16,] 182.5 0.8456660
[17,] 187.5 0.2114165
[18,] 192.5 0.0000000
[19,] 197.5 0.2114165
[20,] 202.5 0.2114165
[21,] 212.5 0.2114165
[22,] 227.5 0.0000000
[23,] 232.5 0.8456660
[24,] 237.5 0.4228330
[25,] 242.5 0.2114165
[26,] 247.5 0.4228330
[27,] 252.5 0.8456660
[28,] 257.5 0.6342495
[29,] 262.5 0.4228330
[30,] 267.5 0.6342495
[31,] 272.5 1.0570825
[32,] 277.5 0.8456660
[33,] 282.5 1.0570825
[34,] 287.5 1.9027484
[35,] 292.5 0.8456660
[36,] 297.5 0.8456660
[37,] 302.5 0.4228330
[38,] 307.5 1.9027484
[39,] 312.5 2.5369979
[40,] 317.5 1.4799154
[41,] 322.5 1.4799154
[42,] 327.5 1.0570825
[43,] 332.5 1.9027484
[44,] 337.5 2.9598309
[45,] 342.5 2.1141649
[46,] 347.5 3.3826638
[47,] 352.5 2.3255814
[48,] 357.5 2.9598309
[49,] 362.5 1.9027484
[50,] 367.5 3.3826638
[51,] 372.5 2.1141649
[52,] 377.5 1.4799154
[53,] 382.5 1.4799154
[54,] 387.5 2.9598309
[55,] 392.5 0.8456660
[56,] 397.5 0.4228330
[57,] 402.5 1.0570825
[58,] 407.5 0.4228330
[59,] 417.5 0.6342495
[60,] 422.5 0.4228330
[61,] 427.5 0.4228330
[62,] 432.5 0.4228330
[63,] 437.5 0.4228330
[64,] 442.5 0.6342495
[65,] 447.5 0.8456660
       [,1]      [,2]
 [1,]  92.5 0.0000000
 [2,] 202.5 0.2114165
 [3,] 207.5 0.4228330
 [4,] 212.5 0.6342495
 [5,] 217.5 1.2684989
 [6,] 227.5 0.2114165
 [7,] 232.5 1.4799154
 [8,] 237.5 0.8456660
 [9,] 242.5 0.6342495
[10,] 252.5 0.2114165
[11,] 257.5 0.0000000
[12,] 322.5 0.6342495
[13,] 327.5 1.2684989
[14,] 332.5 1.0570825
[15,] 337.5 1.4799154
[16,] 342.5 1.0570825
[17,] 362.5 1.2684989
[18,] 367.5 1.0570825
[19,] 372.5 2.1141649
[20,] 377.5 1.9027484
[21,] 382.5 0.6342495
[22,] 387.5 0.8456660
[23,] 392.5 0.8456660
[24,] 397.5 0.2114165
[25,] 402.5 0.2114165
[26,] 412.5 0.0000000
[27,] 432.5 0.2114165
[28,] 447.5 0.2114165
      [,1]     [,2]
[1,] 222.5 1.057082
[2,] 362.5 0.422833
[3,] 367.5 7.188161
[4,] 372.5 3.382664
[5,] 377.5 1.479915
[6,] 382.5 1.691332
[7,] 387.5 1.479915
[8,] 392.5 0.422833
     [,1] [,2]
[1] "making cruise html"
[1] "2025-04-29 20:34:55 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"