[1] "2025-04-29 20:05:59 MDT" [1] "1312" "131219" "d353" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131219a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 44496 63 [1] 44496 [1] 44496 [1] "testing skipping spike filter" [1] 44496 [1] 44496 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:06:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.721" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.721" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:06:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:06:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:06:10 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:06:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 17 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 724 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:06:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.2" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.418 co2off = 370.06 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 68 77 0.04732830 0.05358796 0.05115348 2 35.26604 236.0358 3 2 78 86 0.05428339 0.06054262 0.05805862 2 -13.71788 331.4920 5 2 367 376 0.25604870 0.26230787 0.25987382 3 -14.36030 330.5927 6 4 377 386 0.26300347 0.26927083 0.26683573 3 35.08768 238.3736 7 3 387 396 0.26996649 0.27622590 0.27518283 3 61.08946 162.8715 9 4 661 670 0.46472685 0.47098611 0.46855204 2 35.06239 235.4358 10 2 671 678 0.47168171 0.47794155 0.47550706 2 -14.73479 324.6979 11 5 679 688 0.47863681 0.48489589 0.48385279 NA 31.99356 219.4813 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.261874 1.384352 -0.0034505309 -1.29834095 0.010561678 4.671735 3 1.262012 1.384343 -0.0006659234 -0.09090176 0.013615382 3.465350 5 1.264444 1.386855 -0.0148904264 -0.48132445 0.037482433 2.712733 6 1.264573 1.386980 0.0063021802 -0.57272035 0.016759773 2.279508 7 1.264632 1.387034 -0.0006559508 -1.52393741 0.004217568 2.024135 9 1.267146 1.389790 -0.0116595580 -0.21621435 0.028786695 2.291700 10 1.267165 1.389801 -0.0184951502 -0.59045816 0.053657721 3.354449 11 1.267587 1.390249 -0.0118577075 -2.61200917 0.008396893 3.515166 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.279 co2l1 = 0.416 co2l0 = 0.142" [1] "co2l0 = -147.75 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 60 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "15 out of 610 1-min values rejected as stack air" [1] "15 out of 610 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"