[1] "2025-04-29 20:05:23 MDT" [1] "1312" "131218" "d352" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131218a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85860 63 [1] 85860 [1] 85860 [1] "testing skipping spike filter" [1] 85860 [1] 85860 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:05:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.797, ave o2scale2 = 0.726" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.797, ave o2scale2 = 0.726" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:05:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:05:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:05:46 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:05:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1421 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:05:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.3" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.42 co2off = 383.6 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.04 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.09 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 3 12 0.003694271 0.009953328 0.007519123 3 -13.39416 327.5800 3 4 13 22 0.010648727 0.016910938 0.014475438 3 35.30903 240.2072 4 3 23 32 0.017606539 0.023867535 0.022823278 3 60.80154 163.6938 6 4 303 312 0.212408507 0.218667361 0.216233236 2 35.18973 239.0795 7 2 313 322 0.219362674 0.225622222 0.223188021 2 -13.77855 327.9561 8 5 323 332 0.226317622 0.232576505 0.231533442 NA 29.15472 216.8000 10 2 602 611 0.421143576 0.427403501 0.424969383 3 -14.12811 329.8707 11 4 612 621 0.428098814 0.434364062 0.431927152 3 35.10822 238.2067 12 3 622 631 0.435059549 0.441334259 0.440287102 3 60.96612 156.6711 14 4 900 908 0.629939728 0.636248235 0.633945312 2 35.09718 241.7190 15 2 909 918 0.636949132 0.643254630 0.640802557 2 -14.20194 322.9823 17 2 1195 1204 0.838819300 0.845125000 0.842672765 3 -14.26285 331.8639 18 4 1205 1214 0.845826823 0.852135937 0.849682259 3 35.15602 233.4904 19 5 1215 1224 0.852836950 0.859143547 0.858092499 NA 29.51097 232.9336 20 3 1225 1233 0.859844907 0.866149537 0.865449171 3 60.89992 165.8606 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.246898 1.367963 0.0035692088 -1.3060169 0.014185474 3.8410866 3 1.247203 1.368285 0.0017703998 0.7539451 0.011933549 4.3775839 4 1.247351 1.368430 0.0063577630 0.1620209 0.016258272 1.2345639 6 1.250684 1.372044 0.0016703454 -1.2168167 0.018148069 4.4283607 7 1.250823 1.372188 0.0006528014 -0.1270462 0.012647233 2.1015113 8 1.250942 1.372316 -0.0626014230 0.3199206 0.044326756 0.4824139 10 1.255608 1.377437 -0.0136075886 -0.9730378 0.034126697 3.2583848 11 1.255730 1.377549 0.0015973448 -0.8167473 0.006688376 2.6983679 12 1.255988 1.377812 0.0034632426 -2.3454757 0.009884941 3.5415988 14 1.258179 1.380091 -0.0043750927 -4.2956427 0.017344538 14.1850612 15 1.258338 1.380326 0.0078249432 2.0134702 0.020553366 9.1087105 17 1.261002 1.383375 0.0081005080 1.4727006 0.020295554 4.1032929 18 1.261204 1.383646 0.0068167893 -0.8245808 0.017203221 8.4813685 19 1.261162 1.383430 -0.1575198216 -7.1316135 0.112385784 12.8569277 20 1.261124 1.383203 -0.0039954686 0.1258149 0.012670790 0.3989024 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.179 co2l1 = 0.417 co2l0 = 0.126" [1] "co2l0 = -149.6 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "77 out of 205 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "128 out of 1216 1-min values rejected as stack air" [1] "128 out of 1216 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"