[1] "2025-04-29 20:04:50 MDT" [1] "1312" "131217" "d351" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131217a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:04:54 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.803, ave o2scale2 = 0.731" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.803, ave o2scale2 = 0.731" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:04:55 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:04:55 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:05:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:05:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 421 row(s) with high TFRIDGE" [1] "TEMP: 993 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:05:19 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.3" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.426 co2off = 376.39 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 117 126 0.3774990 0.3837622 0.3813277 2 35.60452 243.4741 1.246928 3 2 127 136 0.3844573 0.3907172 0.3882829 2 -12.42100 333.3491 1.246820 5 2 409 417 0.5862639 0.5925231 0.5900392 3 -13.24040 319.3846 1.243189 6 4 418 427 0.5932188 0.5994780 0.5970440 3 35.30866 233.1300 1.243054 7 5 428 437 0.6001736 0.6064370 0.6053939 NA 29.09869 216.9536 1.243113 8 3 438 447 0.6071323 0.6133918 0.6123485 3 60.74948 166.3006 1.243068 10 4 700 709 0.7949582 0.8012176 0.7987831 2 35.31063 237.3293 1.243706 11 2 710 719 0.8019132 0.8081929 0.8057493 2 -13.20783 326.4641 1.243933 jfcv2 co2slp o2slp co2sd o2sd 2 1.370398 -0.0074299002 -0.2085915 0.019911516 4.068773 3 1.370274 -0.0177076293 -1.0548083 0.043804711 4.902842 5 1.364125 -0.0049655937 -5.5235932 0.016441696 20.844624 6 1.364035 0.0037715606 -0.9472132 0.011065501 7.777910 7 1.364158 -0.0660259611 3.0447833 0.046757436 4.148717 8 1.364119 0.0001143415 0.9717907 0.006014468 2.017879 10 1.364385 -0.0040826667 -0.2126408 0.014300662 4.242490 11 1.364620 0.0026711680 0.4136005 0.011618073 2.894778 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.848 co2l1 = 0.425 co2l0 = 0.123" [1] "co2l0 = -150.75 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 892 1-min values rejected as stack air" [1] "0 out of 892 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"