[1] "2025-04-29 20:04:11 MDT" [1] "1312" "131216" "d350" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131216a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:04:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.803, ave o2scale2 = 0.73" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.803, ave o2scale2 = 0.73" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:04:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:04:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:04:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:04:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1428 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:04:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.3" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.433 co2off = 382.95 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 178 187 0.1251486 0.1314110 0.1289745 2 35.73218 242.6245 1.244811 3 2 188 197 0.1321076 0.1383667 0.1359325 2 -11.86666 333.6004 1.244977 5 2 478 487 0.3338435 0.3401023 0.3376683 3 -11.96106 329.9314 1.246484 6 4 488 497 0.3407977 0.3470576 0.3446233 3 35.65745 236.2935 1.246381 7 5 498 507 0.3477528 0.3540122 0.3529691 NA 30.02050 213.1903 1.246311 8 3 508 517 0.3547079 0.3609702 0.3599273 3 60.73459 167.5322 1.246326 10 4 778 787 0.5425949 0.5488543 0.5464201 2 35.67341 241.0878 1.247385 11 2 788 797 0.5495498 0.5558090 0.5533749 2 -11.98134 331.4589 1.247424 13 2 1077 1086 0.7513100 0.7575694 0.7551353 3 -12.44827 327.7818 1.246589 14 4 1087 1094 0.7582650 0.7645243 0.7623219 3 35.63430 249.3749 1.246284 15 3 1095 1102 0.7652199 0.7714792 0.7711314 3 60.72856 163.6019 1.246150 17 4 1371 1380 0.9600220 0.9662813 0.9638470 2 35.52307 238.6000 1.246589 18 2 1381 1390 0.9669768 0.9732396 0.9708022 2 -12.69967 327.3967 1.246600 19 5 1391 1400 0.9739352 0.9802025 0.9791593 NA 28.82388 221.1766 1.246378 jfcv2 co2slp o2slp co2sd o2sd 2 1.368259 -0.006001337 0.80650768 0.015144263 2.227978 3 1.368450 -0.007808529 -1.13079176 0.019541851 3.272746 5 1.370205 -0.016221689 -0.50890917 0.040170618 4.456176 6 1.370077 0.004561230 -0.15207888 0.012119787 6.258991 7 1.370034 -0.061168442 0.88825022 0.043310290 4.477806 8 1.370099 -0.001241800 -2.44839253 0.006924250 3.464319 10 1.371110 -0.001780793 0.07055117 0.018605483 1.184706 11 1.371157 0.003051604 -0.13959745 0.010648815 2.861865 13 1.370200 0.008831965 1.83142114 0.024380717 9.829427 14 1.369886 0.008555820 5.64389842 0.026977781 19.966229 15 1.369793 0.003630005 -5.06732460 0.012400983 3.588813 17 1.369950 -0.001505831 1.02519761 0.006035279 4.386357 18 1.369954 -0.007599666 0.57929602 0.019384207 3.419576 19 1.369733 -0.069134775 0.32076125 0.048967145 1.116714 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.581 co2l1 = 0.43 co2l0 = 0.114" [1] "co2l0 = -149.81 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "85 out of 145 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "60 out of 1240 1-min values rejected as stack air" [1] "60 out of 1240 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"