[1] "2025-04-29 20:03:50 MDT" [1] "1312" "131215" "d349" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131215a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 79680 63 [1] 79680 [1] 79680 [1] "testing skipping spike filter" [1] 79680 [1] 79680 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:03:54 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.81, ave o2scale2 = 0.736" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "45 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.81, ave o2scale2 = 0.736" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "45 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:03:54 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:03:54 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:04:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:04:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 45 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with variable TFCELL" [1] "TEMP: 1276 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:04:06 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.3" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.439 co2off = 379.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 4 263 272 0.2904115 0.2966747 0.2942382 2 35.99111 243.7660 1.230346 4 2 273 282 0.2973701 0.3036314 0.3011953 2 -10.82463 336.6363 1.230683 6 2 561 570 0.4992088 0.5054680 0.5030338 3 -11.11761 334.7942 1.234325 7 4 571 580 0.5061632 0.5124556 0.5100069 3 35.92400 241.6569 1.234427 8 3 581 590 0.5131553 0.5194527 0.5184013 3 60.58292 170.7071 1.234466 10 4 859 868 0.7078674 0.7141273 0.7116931 2 35.82738 243.8692 1.237985 11 2 869 878 0.7148267 0.7210860 0.7186519 2 -11.51446 332.6111 1.238256 12 5 879 888 0.7217815 0.7280409 0.7269979 NA 32.71719 220.7517 1.238430 14 2 1157 1166 0.9162535 0.9225127 0.9200787 3 -11.37405 331.4139 1.242707 15 4 1167 1176 0.9232083 0.9294778 0.9270392 3 35.78529 240.4499 1.242669 16 3 1177 1186 0.9301779 0.9364510 0.9354072 3 60.63153 168.4246 1.242771 jfcv2 co2slp o2slp co2sd o2sd 3 1.353452 0.0007274824 -1.37008628 0.004180331 5.969471 4 1.353811 0.0123953819 0.36646606 0.032766719 4.335354 6 1.357139 -0.0059900065 -0.12266045 0.018147085 1.260965 7 1.357269 0.0012556357 -0.71158285 0.007614161 3.319813 8 1.357201 0.0015280163 0.37014805 0.007222450 1.054905 10 1.360946 0.0017192637 -1.30633478 0.006829639 6.518920 11 1.361299 -0.0098148762 0.05195302 0.026398727 1.328675 12 1.361501 -0.0770287141 3.41244390 0.054535610 4.648769 14 1.366033 -0.0105667046 0.23160069 0.026013528 3.486385 15 1.365983 0.0038020646 -0.99661302 0.012211763 4.633634 16 1.366088 0.0036698671 0.81580218 0.010082971 1.091625 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.235 co2l1 = 0.436 co2l0 = 0.108" [1] "co2l0 = -150 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "86 out of 165 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "79 out of 1094 1-min values rejected as stack air" [1] "79 out of 1094 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"