[1] "2025-04-29 20:03:18 MDT" [1] "1312" "131214" "d348" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131214a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83649 63 [1] 83649 [1] 83649 [1] "testing skipping spike filter" [1] 83649 [1] 83649 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:03:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.818, ave o2scale2 = 0.744" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "124 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.818, ave o2scale2 = 0.744" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "124 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:03:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:03:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:03:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:03:39 MDT" [1] "reading in recalculated plot titles" [1] "Removed 125 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1269 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:03:45 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.3" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.444 co2off = 378.46 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.04 minutes" [1] "Average Cal: 7.77 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 115 122 0.08498038 0.08984838 0.08810987 2 -16.85964 296.9987 3 4 123 132 0.09054398 0.09680324 0.09436922 2 29.50345 206.9119 6 4 380 384 0.29296875 0.29575026 0.29505494 2 29.58002 208.2709 7 2 385 394 0.29923411 0.30549398 0.30305962 2 -16.79500 300.0201 10 2 661 667 0.50154557 0.50573273 0.50433685 3 -17.20201 296.5078 11 4 668 677 0.50782731 0.51411855 0.51166638 3 29.35026 222.6993 12 3 678 686 0.51481823 0.52040075 0.51970328 3 53.75704 136.5176 14 4 928 936 0.71034977 0.71594129 0.71384248 2 29.32750 208.6714 15 2 937 945 0.71664172 0.72223791 0.72014264 2 -17.30203 298.4346 17 2 1196 1204 0.91905735 0.92464065 0.92254656 3 -17.60079 298.4907 18 4 1205 1214 0.92533912 0.93161878 0.92917693 3 29.15711 208.2975 19 5 1215 1224 0.93231690 0.93859951 0.93755226 NA 22.02041 187.3793 20 3 1225 1233 0.93929745 0.94488232 0.94418435 3 53.81362 136.7464 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.220113 1.340597 -0.004089151 0.28152788 0.010054493 1.8605678 3 1.220034 1.340531 -0.001890836 -0.83026733 0.011436472 3.5598850 6 1.220480 1.341729 -0.003152252 -0.09195656 0.003226074 0.3053795 7 1.220630 1.341816 -0.020568165 1.33558813 0.050583603 4.0882836 10 1.223102 1.344727 -0.010715271 3.55133598 0.017216759 7.3302771 11 1.222532 1.344315 0.002631174 -3.66086987 0.011809048 19.7341566 12 1.222476 1.344346 0.003349672 1.67549306 0.010937185 1.7905655 14 1.224009 1.346107 0.001792599 0.28834593 0.005736397 2.2396806 15 1.224160 1.346146 -0.004462624 1.90622465 0.010794292 5.6768121 17 1.225697 1.347867 -0.024568535 -0.43130160 0.053471686 2.4262735 18 1.225672 1.347912 -0.003137066 0.99957494 0.009207295 3.5388969 19 1.225814 1.348036 -0.062720153 -1.96712957 0.044591921 2.8659931 20 1.225960 1.348283 0.006898209 0.97885757 0.017015082 0.9838049 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.917 co2l1 = 0.442 co2l0 = 0.179" [1] "co2l0 = -142.98 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "106 out of 190 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "84 out of 1081 1-min values rejected as stack air" [1] "84 out of 1081 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"