[1] "2025-04-29 20:02:43 MDT" [1] "1312" "131213" "d347" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131213a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:02:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.748" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "148 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.748" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "150 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:02:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:02:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:03:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:03:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 150 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1286 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:03:13 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.3" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.446 co2off = 377.98 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 8.01 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 44 52 0.04077080 0.04633446 0.04424783 2 29.56025 212.4832 3 2 53 62 0.04703003 0.05328935 0.05085502 2 -17.00873 299.8608 6 2 305 309 0.25224537 0.25502720 0.25433175 3 -16.61717 300.4203 7 4 310 316 0.25572338 0.26059144 0.25878319 3 29.64557 204.9253 8 3 317 322 0.26267772 0.26894835 0.26929604 3 53.85086 152.3076 10 4 563 571 0.45816600 0.46373377 0.46164468 2 29.59101 209.4659 11 2 572 580 0.46442925 0.46999285 0.46790634 2 -16.80897 299.1871 13 2 835 843 0.66691551 0.67247925 0.67039296 3 -16.65923 299.7310 14 4 844 853 0.67317486 0.67943776 0.67700210 3 29.53373 206.7704 15 5 854 863 0.68013316 0.68639638 0.68535326 NA 23.11037 183.1612 16 3 864 872 0.68709172 0.69265622 0.69196064 3 53.78891 135.2014 18 4 1116 1125 0.87490634 0.88116942 0.87873236 2 29.44233 209.7663 19 2 1126 1134 0.88186574 0.88743313 0.88534386 2 -17.19872 298.6213 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.211903 1.333985 -0.0006304398 1.5784009 0.007686145 11.1554674 3 1.212059 1.334075 -0.0113283263 -0.6332589 0.029110372 3.7941428 6 1.211909 1.334048 -0.0031831145 4.3006847 0.003260400 4.5807486 7 1.212182 1.334162 0.0087493120 -2.0437359 0.020778109 4.3660596 8 1.212580 1.334638 -0.0046115841 29.6615298 0.013642401 21.0018340 10 1.214490 1.336555 0.0043473056 -0.7782744 0.011269857 2.3238997 11 1.214715 1.336711 -0.0051860596 -1.0030429 0.017695738 2.9505375 13 1.215887 1.338003 -0.0173691623 0.5994417 0.037759910 3.3303642 14 1.215856 1.337914 0.0020346101 -0.5255274 0.005555517 2.1290913 15 1.216080 1.338178 -0.0441855627 -0.7463646 0.031289475 1.1827096 16 1.216181 1.338243 0.0025583072 0.4859906 0.006362923 0.7760231 18 1.218567 1.340722 -0.0032679940 -0.3598777 0.010224476 1.0352964 19 1.218582 1.340671 -0.0046700415 0.2498382 0.011323651 3.1391860 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.81 co2l1 = 0.443 co2l0 = 0.166" [1] "co2l0 = -144.41 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "124 out of 245 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "121 out of 1113 1-min values rejected as stack air" [1] "121 out of 1113 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"