[1] "2025-04-29 19:59:53 MDT" [1] "1312" "131207" "d341" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131207a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85487 63 [1] 85487 [1] 85487 [1] "testing skipping spike filter" [1] 85487 [1] 85487 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:59:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.806, ave o2scale2 = 0.733" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "120 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.806, ave o2scale2 = 0.733" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "119 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:59:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:59:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:00:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:00:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 119 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 724 row(s) with low FLSP" [1] "Removed 1 row(s) with variable TFCELL" [1] "TEMP: 578 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:00:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.3" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.2" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.458 co2off = 371.28 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 63.23 minutes" [1] "Shortest Cal: 0 minutes" [1] "Longest Cal: 299.53 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 5 [4,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 10 0.001553241 0.007816262 0.005382118 1 29.28754 204.1975 4 4 273 281 0.204009230 0.209572917 0.207486636 2 29.09944 206.9634 5 2 282 286 0.210268519 0.213050145 0.212354784 2 -17.31667 288.7068 9 4 529 541 0.420840162 0.620592101 0.547198416 2 29.48887 205.9937 10 2 542 559 0.621287471 0.829295139 0.738247893 2 -15.59611 296.4701 11 4 560 569 0.829990741 0.836253183 0.833817415 2 29.76314 209.4813 12 3 570 578 0.836949769 0.842512645 0.841817110 2 53.26391 131.3516 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.240351 1.364086 0.0030971430 0.26188331 0.008705239 3.945925 4 1.239740 1.363508 -0.0059919364 -1.77581876 0.015276872 5.382071 5 1.239762 1.363347 -0.0211908769 -2.76184827 0.021799363 2.805688 9 1.240333 1.364405 0.0009100992 0.01704131 0.131358796 16.462844 10 1.242232 1.366308 0.0013865327 0.01176146 0.210261662 5.961856 11 1.243206 1.367265 0.0026508583 0.20948476 0.010137104 1.895764 12 1.243201 1.367188 0.0055601983 -1.49011706 0.013765420 1.500887 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.843 co2l1 = 0.446 co2l0 = 0" [1] "co2l0 = -144.4 co2l1 = 0.231" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "6 out of 55 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "49 out of 479 1-min values rejected as stack air" [1] "49 out of 479 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"