[1] "2025-04-29 19:58:02 MDT" [1] "1312" "131204" "d338" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131204a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:58:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.806, ave o2scale2 = 0.732" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "65 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.806, ave o2scale2 = 0.732" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "65 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:58:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:58:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:58:24 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:58:25 MDT" [1] "reading in recalculated plot titles" [1] "Removed 65 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1371 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:58:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.4" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.2" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.433 co2off = 379.12 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 8.28 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 100 108 0.07327060 0.07883455 0.07674793 3 -18.57968 297.1749 3 4 109 118 0.07953131 0.08579054 0.08335626 3 28.88377 208.4131 4 3 119 127 0.08648611 0.09204977 0.09135418 3 53.79481 134.5491 6 4 386 394 0.28198325 0.28755095 0.28546181 2 28.75319 206.5608 7 2 395 404 0.28824653 0.29450561 0.29207143 2 -19.19420 300.9830 10 2 670 678 0.49068637 0.49625394 0.49416567 3 -19.01937 302.2089 11 4 679 688 0.49694928 0.50320839 0.50077441 3 28.68651 206.4438 12 3 689 697 0.50390428 0.50946765 0.50877234 3 53.75371 136.2074 14 4 963 971 0.69942358 0.70499120 0.70290188 2 28.46166 201.4175 15 2 972 979 0.70707755 0.71194647 0.71020738 2 -19.66122 307.5497 17 2 1249 1257 0.90810602 0.91367014 0.91158388 3 -17.95888 298.6234 18 4 1258 1266 0.91436574 0.92062520 0.91804209 3 29.00023 204.1560 19 5 1267 1276 0.92132072 0.92758073 0.92653740 NA 21.02144 204.2816 20 3 1277 1284 0.92827622 0.93383993 0.93349219 3 53.56463 150.1811 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.238626 1.362796 -1.279147e-02 -0.6590912 0.029818754 3.3776140 3 1.238655 1.362776 -1.221724e-03 -0.1933466 0.010085170 3.4320964 4 1.238807 1.362938 2.235243e-03 3.9268228 0.009322911 4.5223609 6 1.239738 1.363936 -6.910729e-03 -1.4954414 0.015060209 4.0101808 7 1.239758 1.363888 -1.575806e-02 0.4505649 0.039011971 2.0638993 10 1.242617 1.366927 -1.787682e-02 3.4250202 0.039063967 9.0772765 11 1.242580 1.366873 2.938570e-03 -1.3668365 0.009019166 4.1219885 12 1.242800 1.367039 5.802781e-05 -0.3193117 0.002110816 0.8695137 14 1.243188 1.367466 -2.976165e-04 -3.4477595 0.003635913 8.9292243 15 1.243110 1.367142 5.939403e-04 2.4064586 0.003076562 9.7266756 17 1.244475 1.368767 6.945717e-03 0.9856893 0.016052219 7.3120489 18 1.244562 1.368806 -4.340028e-03 0.9460751 0.012979933 5.1963364 19 1.244331 1.368558 -7.876014e-02 -2.6397862 0.055773047 4.8803318 20 1.244468 1.368681 7.677575e-03 17.9956790 0.018817204 12.7439539 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.481 co2l1 = 0.43 co2l0 = 0.183" [1] "co2l0 = -141.1 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "153 out of 407 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "254 out of 1177 1-min values rejected as stack air" [1] "254 out of 1177 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"