[1] "2025-04-29 19:56:44 MDT" [1] "1312" "131202" "d336" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131202a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:56:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.812, ave o2scale2 = 0.738" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "33 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.812, ave o2scale2 = 0.738" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "33 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:56:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:56:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:57:10 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:57:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 33 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1403 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:57:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.4" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.2" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.442 co2off = 378.46 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 8.27 minutes" [1] "Shortest Cal: 7.06 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 3 1 8 0.000755787 0.00565897 0.005311241 1 54.30107 136.1842 3 4 275 283 0.194868027 0.20043533 0.198346660 2 29.74519 206.4371 4 2 284 293 0.201130787 0.20739005 0.204955845 2 -17.17665 301.5127 6 2 568 576 0.403580845 0.40914468 0.407057978 3 -17.19379 297.4150 7 4 577 586 0.409840307 0.41609948 0.413665202 3 29.69173 210.3343 8 5 587 596 0.416794821 0.42305880 0.422012225 NA 22.81444 182.9808 9 3 597 605 0.423754109 0.42932170 0.428624961 3 54.22011 132.1064 11 4 856 864 0.612312529 0.61788079 0.615793097 2 29.69279 208.5185 12 2 865 873 0.618576389 0.62414071 0.622053890 2 -17.08092 300.0849 14 2 1150 1158 0.821056597 0.82662037 0.824533929 3 -17.17947 296.6270 15 4 1159 1168 0.827315972 0.83357523 0.831140972 3 29.58941 210.6399 16 3 1169 1177 0.834270833 0.83983452 0.839139053 3 54.04980 134.6206 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.230811 1.355008 -0.0032827979 2.3495590 0.006611356 1.663812 3 1.231152 1.355056 0.0007351710 1.7110281 0.003120831 6.397382 4 1.231255 1.355142 -0.0011210450 3.4853834 0.006804258 9.333135 6 1.231431 1.355454 -0.0055693319 -0.8547207 0.012296143 3.789182 7 1.231425 1.355345 0.0015088633 0.7695813 0.009082517 4.080032 8 1.231541 1.355401 -0.0390673447 -1.8450157 0.027842330 2.754098 9 1.231366 1.355204 0.0029523413 -1.5892191 0.006675877 1.688687 11 1.232015 1.355948 -0.0033883750 -0.6681113 0.007614393 3.240809 12 1.232111 1.355972 0.0012528484 -0.7436014 0.010570923 3.794786 14 1.231857 1.355380 -0.0034033138 -0.3619831 0.015833972 10.540096 15 1.231750 1.355229 0.0080405251 0.2699733 0.020289807 2.738853 16 1.231786 1.355221 -0.0002073338 -2.3196167 0.005176749 2.326638 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.778 co2l1 = 0.439 co2l0 = 0.163" [1] "co2l0 = -141.5 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "150 out of 275 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "125 out of 1252 1-min values rejected as stack air" [1] "125 out of 1252 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"