[1] "2017-04-06 02:06:55 MDT"
[1] "1312"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1312/131123.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1312/131124.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1312/131125.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1312/131126.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1312/131127.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1312/131128.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1312/131129.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1312/131130.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1312/131201.html"  
[10] "/net/www/docs/homes/stephens/GO2/1312/131202.html"  
[11] "/net/www/docs/homes/stephens/GO2/1312/131203.html"  
[12] "/net/www/docs/homes/stephens/GO2/1312/131204.html"  
[13] "/net/www/docs/homes/stephens/GO2/1312/131205.html"  
[14] "/net/www/docs/homes/stephens/GO2/1312/131206.html"  
[15] "/net/www/docs/homes/stephens/GO2/1312/131207.html"  
[16] "/net/www/docs/homes/stephens/GO2/1312/131208.html"  
[17] "/net/www/docs/homes/stephens/GO2/1312/131209.html"  
[18] "/net/www/docs/homes/stephens/GO2/1312/131210.html"  
[19] "/net/www/docs/homes/stephens/GO2/1312/131211.html"  
[20] "/net/www/docs/homes/stephens/GO2/1312/131212.html"  
[21] "/net/www/docs/homes/stephens/GO2/1312/131213.html"  
[22] "/net/www/docs/homes/stephens/GO2/1312/131214.html"  
[23] "/net/www/docs/homes/stephens/GO2/1312/131215.html"  
[24] "/net/www/docs/homes/stephens/GO2/1312/131216.html"  
[25] "/net/www/docs/homes/stephens/GO2/1312/131217.html"  
[26] "/net/www/docs/homes/stephens/GO2/1312/131218.html"  
[27] "/net/www/docs/homes/stephens/GO2/1312/131219.html"  
[28] "/net/www/docs/homes/stephens/GO2/1312/lmg_1312.html"
 [1] "/net/www/docs/homes/stephens/GO2/1312/131123.html"
 [2] "/net/www/docs/homes/stephens/GO2/1312/131124.html"
 [3] "/net/www/docs/homes/stephens/GO2/1312/131125.html"
 [4] "/net/www/docs/homes/stephens/GO2/1312/131126.html"
 [5] "/net/www/docs/homes/stephens/GO2/1312/131127.html"
 [6] "/net/www/docs/homes/stephens/GO2/1312/131128.html"
 [7] "/net/www/docs/homes/stephens/GO2/1312/131129.html"
 [8] "/net/www/docs/homes/stephens/GO2/1312/131130.html"
 [9] "/net/www/docs/homes/stephens/GO2/1312/131201.html"
[10] "/net/www/docs/homes/stephens/GO2/1312/131202.html"
[11] "/net/www/docs/homes/stephens/GO2/1312/131203.html"
[12] "/net/www/docs/homes/stephens/GO2/1312/131204.html"
[13] "/net/www/docs/homes/stephens/GO2/1312/131205.html"
[14] "/net/www/docs/homes/stephens/GO2/1312/131206.html"
[15] "/net/www/docs/homes/stephens/GO2/1312/131207.html"
[16] "/net/www/docs/homes/stephens/GO2/1312/131208.html"
[17] "/net/www/docs/homes/stephens/GO2/1312/131209.html"
[18] "/net/www/docs/homes/stephens/GO2/1312/131210.html"
[19] "/net/www/docs/homes/stephens/GO2/1312/131211.html"
[20] "/net/www/docs/homes/stephens/GO2/1312/131212.html"
[21] "/net/www/docs/homes/stephens/GO2/1312/131213.html"
[22] "/net/www/docs/homes/stephens/GO2/1312/131214.html"
[23] "/net/www/docs/homes/stephens/GO2/1312/131215.html"
[24] "/net/www/docs/homes/stephens/GO2/1312/131216.html"
[25] "/net/www/docs/homes/stephens/GO2/1312/131217.html"
[26] "/net/www/docs/homes/stephens/GO2/1312/131218.html"
[27] "/net/www/docs/homes/stephens/GO2/1312/131219.html"
[1] "131123" "131219"
 [1] "131123" "131124" "131125" "131126" "131127" "131128" "131129" "131130"
 [9] "131201" "131202" "131203" "131204" "131205" "131206" "131207" "131208"
[17] "131209" "131210" "131211" "131212" "131213" "131214" "131215" "131216"
[25] "131217" "131218" "131219"
[1] "000000" "999999"
[1] "131123_mr_proc.txt, 131123_cal_periods.txt, 131123_cal_param.txt,614jogs"
[1] "131124_mr_proc.txt, 131124_cal_periods.txt, 131124_cal_param.txt,1405jogs"
[1] "131125_mr_proc.txt, 131125_cal_periods.txt, 131125_cal_param.txt,1409jogs"
[1] "131126_mr_proc.txt, 131126_cal_periods.txt, 131126_cal_param.txt,1418jogs"
[1] "131127_mr_proc.txt, 131127_cal_periods.txt, 131127_cal_param.txt,1402jogs"
[1] "131128_mr_proc.txt, 131128_cal_periods.txt, 131128_cal_param.txt,1364jogs"
[1] "131129_mr_proc.txt, 131129_cal_periods.txt, 131129_cal_param.txt,1381jogs"
[1] "131130_mr_proc.txt, 131130_cal_periods.txt, 131130_cal_param.txt,1329jogs"
[1] "131201_mr_proc.txt, 131201_cal_periods.txt, 131201_cal_param.txt,953jogs"
[1] "131202_mr_proc.txt, 131202_cal_periods.txt, 131202_cal_param.txt,1403jogs"
[1] "131203_mr_proc.txt, 131203_cal_periods.txt, 131203_cal_param.txt,1346jogs"
[1] "131204_mr_proc.txt, 131204_cal_periods.txt, 131204_cal_param.txt,1371jogs"
[1] "131205_mr_proc.txt, 131205_cal_periods.txt, 131205_cal_param.txt,1319jogs"
[1] "131206_mr_proc.txt, 131206_cal_periods.txt, 131206_cal_param.txt,995jogs"
[1] "131207_mr_proc.txt, 131207_cal_periods.txt, 131207_cal_param.txt,578jogs"
[1] "131208_mr_proc.txt, 131208_cal_periods.txt, 131208_cal_param.txt,108jogs"
[1] "131209_mr_proc.txt, 131209_cal_periods.txt, 131209_cal_param.txt,109jogs"
[1] "131210_mr_proc.txt, 131210_cal_periods.txt, 131210_cal_param.txt,84jogs"
[1] "131211_mr_proc.txt, 131211_cal_periods.txt, 131211_cal_param.txt,1061jogs"
[1] "131212_mr_proc.txt, 131212_cal_periods.txt, 131212_cal_param.txt,1224jogs"
[1] "131213_mr_proc.txt, 131213_cal_periods.txt, 131213_cal_param.txt,1286jogs"
[1] "131214_mr_proc.txt, 131214_cal_periods.txt, 131214_cal_param.txt,1269jogs"
[1] "131215_mr_proc.txt, 131215_cal_periods.txt, 131215_cal_param.txt,1276jogs"
[1] "131216_mr_proc.txt, 131216_cal_periods.txt, 131216_cal_param.txt,1428jogs"
[1] "131217_mr_proc.txt, 131217_cal_periods.txt, 131217_cal_param.txt,993jogs"
[1] "131218_mr_proc.txt, 131218_cal_periods.txt, 131218_cal_param.txt,1421jogs"
[1] "131219_mr_proc.txt, 131219_cal_periods.txt, 131219_cal_param.txt,724jogs"
[1] "131123" "131219" "d327"   "d353"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 02:08:22 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.811, ave o2scale2 = 0.737"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 02:08:50 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 02:09:30 MDT"
[1] "2017-04-06 02:09:39 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -451.9"
[1] "position 2 cylinder CB08911 description: MS CO2 = 405.13 O2 = -631.6"
[1] "position 3 cylinder CB08905 description: LS CO2 = 394.79 O2 = -548.9"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.9 O2 = -579.1"
[1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.15 O2 = -1145.4"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.32 O2 = -763"
[1] "Plotting jog shapes"
[1] "1312 Valve transient for  Line 1 after Line 2 = 3.77 , 2.44 , 0.7 , 0.28 , 0.29 n = 2"
[1] "1312 Valve transient for  Line 1 after Cal = -0.13 , -0.1 , -0.01 , 0 , 0 n = 93"
[1] "1312 Valve transient for  Line 2 after Line 1 = 1.16 , 1.06 , 0.64 , 0.15 , -0.03 n = 1"
[1] "1312 Valve transient for  Line 2 after Cal = 0.19 , 0.17 , 0.12 , 0.08 , 0.06 n = 2"
[1] "1312 Valve transient for  Line 1 after HS = -1.52 , -0.73 , 0.03 , 0.03 , 0.02 n = 33"
[1] "1312 Valve transient for  Line 1 after MS = 0.97 , 0.48 , 0.01 , 0.01 , 0.02 n = 42"
[1] "1312 Valve transient for  Line 1 after LT = -2.61 , -2.33 , -1.52 , -0.86 , -0.41 n = 18"
[1] "1312 Valve transient for  Line 2 after HS = -2.51 , -2.45 , -2.38 , -2.44 , -2.49 n = 1"
[1] "1312 Valve transient for  Line 2 after MS = 0.19 , 0.17 , 0.12 , 0.08 , 0.06 n = 2"
[1] "1312 Valve transient for  HS after Line 1 = 1.27 , 0.63 , 0 , 0 , 0 n = 21"
[1] "1312 Valve transient for  HS after Line 2 = 0.02 , 0.02 , 0.01 , 0.01 , 0.01 n = 1"
[1] "1312 Valve transient for  HS after MS = 0 , 0 , 0 , NA , NA n = 1"
[1] "1312 Valve transient for  HS after LS = 3.49 , 1.76 , 0.02 , 0.01 , 0 n = 29"
[1] "1312 Valve transient for  MS after LS = -1.67 , -0.84 , -0.01 , -0.01 , 0 n = 16"
[1] "1312 Valve transient for  MS after LT = -1.76 , -0.89 , -0.01 , 0 , 0 n = 7"
[1] "1312 Valve transient for  LS after Line 1 = 0.01 , 0.01 , 0 , 0 , 0 n = 27"
[1] "1312 Valve transient for  LS after Line 2 = 0 , 0 , 0 , 0 , 0 n = 2"
[1] "1312 Valve transient for  LS after HS = -3.35 , -1.68 , -0.01 , 0 , 0 n = 40"
[1] "1312 Valve transient for  LT after Line 1 = 0.48 , 0.39 , 0.24 , 0.15 , 0.09 n = 1"
[1] "1312 Valve transient for  LT after HS = -0.85 , -0.21 , 0.37 , 0.3 , 0.24 n = 8"
[1] "1312 Valve transient for  LT after LS = 0.64 , 0.55 , 0.39 , 0.31 , 0.25 n = 11"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "1113 out of 6205 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "5092 out of 25222 1-min values rejected as stack air"
[1] "4968 out of 24414 Line 1 1-min values rejected as stack air"
[1] "124 out of 808 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1312loxy.d327"
[1] "LMG1312loxy.d328"
[1] "LMG1312loxy.d329"
[1] "LMG1312loxy.d330"
[1] "LMG1312loxy.d331"
[1] "LMG1312loxy.d332"
[1] "LMG1312loxy.d333"
[1] "LMG1312loxy.d334"
[1] "LMG1312loxy.d335"
[1] "LMG1312loxy.d336"
[1] "LMG1312loxy.d337"
[1] "LMG1312loxy.d338"
[1] "LMG1312loxy.d339"
[1] "LMG1312loxy.d340"
[1] "LMG1312loxy.d341"
[1] "LMG1312loxy.d342"
[1] "LMG1312loxy.d343"
[1] "LMG1312loxy.d344"
[1] "LMG1312loxy.d345"
[1] "LMG1312loxy.d346"
[1] "LMG1312loxy.d347"
[1] "LMG1312loxy.d348"
[1] "LMG1312loxy.d349"
[1] "LMG1312loxy.d350"
[1] "LMG1312loxy.d351"
[1] "LMG1312loxy.d352"
[1] "LMG1312loxy.d353"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,] 112.5 1.3333333
 [2,] 117.5 1.7777778
 [3,] 122.5 0.8888889
 [4,] 137.5 0.4444444
 [5,] 142.5 0.0000000
 [6,] 147.5 0.4444444
 [7,] 162.5 0.4444444
 [8,] 167.5 0.8888889
 [9,] 212.5 1.3333333
[10,] 217.5 0.4444444
[11,] 222.5 0.8888889
[12,] 227.5 3.1111111
[13,] 232.5 1.7777778
[14,] 237.5 1.7777778
[15,] 242.5 0.4444444
[16,] 247.5 3.5555556
[17,] 252.5 1.7777778
[18,] 257.5 2.2222222
[19,] 262.5 1.3333333
[20,] 267.5 2.6666667
[21,] 272.5 1.7777778
[22,] 277.5 4.8888889
[23,] 282.5 6.6666667
[24,] 287.5 1.3333333
[25,] 292.5 3.1111111
[26,] 297.5 0.8888889
[27,] 302.5 2.2222222
[28,] 307.5 1.3333333
[29,] 312.5 1.3333333
[30,] 317.5 0.8888889
[31,] 322.5 1.3333333
[32,] 327.5 0.4444444
[33,] 332.5 0.4444444
[34,] 337.5 1.7777778
[35,] 342.5 0.4444444
[36,] 347.5 0.4444444
[37,] 362.5 0.4444444
[38,] 372.5 0.4444444
[39,] 377.5 0.8888889
[40,] 387.5 0.4444444
[41,] 442.5 0.4444444
       [,1]      [,2]
 [1,]  92.5 0.4444444
 [2,]  97.5 1.3333333
 [3,] 102.5 5.3333333
 [4,] 107.5 0.8888889
 [5,] 112.5 4.8888889
 [6,] 117.5 3.1111111
 [7,] 122.5 2.2222222
 [8,] 127.5 0.8888889
 [9,] 187.5 1.7777778
[10,] 217.5 0.4444444
[11,] 257.5 0.8888889
[12,] 262.5 2.2222222
[13,] 267.5 4.0000000
[14,] 272.5 3.1111111
[15,] 277.5 0.4444444
[16,] 282.5 0.8888889
[17,] 322.5 0.4444444
[18,] 437.5 0.4444444
[19,] 447.5 0.4444444
      [,1]      [,2]
[1,]  97.5 0.8888889
[2,] 102.5 1.3333333
[3,] 107.5 2.2222222
[4,] 112.5 1.3333333
[5,] 447.5 0.4444444
     [,1] [,2]
[1] "making cruise html"
[1] "2017-04-06 02:10:39 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"