[1] "2025-04-29 19:55:48 MDT" [1] "1312" "131130" "d334" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131130a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83972 63 [1] 83972 [1] 83972 [1] "testing skipping spike filter" [1] 83972 [1] 83972 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:55:52 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.743" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "69 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.743" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "69 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:55:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:55:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:56:10 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:56:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 70 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1329 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:56:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.4" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.2" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.44 co2off = 381.54 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.03 minutes" [1] "Average Cal: 8.48 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 9 0.0006188657 0.006182784 0.004096222 2 30.33493 213.0710 2 2 10 18 0.0068782407 0.012442130 0.010355634 2 -17.42730 297.3476 4 2 299 308 0.2085902778 0.214849537 0.212415346 3 -16.49482 299.6722 5 4 309 318 0.2155450521 0.221804167 0.219369907 3 30.50691 201.9324 6 3 319 328 0.2224995949 0.228758565 0.227715553 3 55.10426 138.2396 8 4 590 598 0.4179941551 0.423557928 0.421471714 2 30.39126 206.4747 9 2 599 608 0.4242534722 0.430512905 0.428078903 2 -16.46930 299.3560 12 2 861 868 0.6263842593 0.631954861 0.630213884 3 -16.72787 305.2312 13 4 869 877 0.6333483796 0.638923148 0.636831862 3 30.25375 210.0849 14 3 878 886 0.6396196759 0.645189815 0.644493654 3 54.76982 137.9818 16 4 1139 1148 0.8346918403 0.840959172 0.838521781 2 30.42192 211.5894 17 2 1149 1158 0.8416556424 0.847922743 0.845485576 2 -15.91247 297.1216 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.234636 1.358251 1.410680e-03 -1.71852192 0.006717750 6.345253 2 1.234680 1.358413 2.194249e-02 2.97903426 0.051506882 8.281102 4 1.229209 1.352431 -4.580734e-03 -3.04731736 0.012172194 9.377546 5 1.229003 1.352149 -1.120415e-03 -0.20559603 0.007727357 3.503862 6 1.228608 1.351743 4.976923e-03 3.60446034 0.015506207 6.030432 8 1.221575 1.343925 8.490874e-04 4.23766443 0.005799653 10.456150 9 1.221174 1.343581 2.277144e-03 0.01128246 0.007671073 7.141462 12 1.219395 1.341674 1.826130e-02 -3.15058488 0.035063884 17.288914 13 1.219119 1.341540 -2.907680e-03 2.36384920 0.007591971 5.997656 14 1.219050 1.341438 -3.615279e-03 -1.96124879 0.011482688 3.107204 16 1.220857 1.343061 -5.677311e-03 1.57418646 0.018871592 4.800094 17 1.220848 1.343053 6.388603e-05 -0.28891982 0.008448042 3.813228 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.605 co2l1 = 0.438 co2l0 = 0.155" [1] "co2l0 = -143.74 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "93 out of 315 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "222 out of 1157 1-min values rejected as stack air" [1] "222 out of 1157 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"