[1] "2025-04-29 19:53:23 MDT" [1] "1312" "131126" "d330" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131126a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:53:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.734" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "18 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.734" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "18 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:53:27 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:53:27 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:53:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:53:49 MDT" [1] "reading in recalculated plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1418 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:53:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.4" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.2" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.417 co2off = 378.34 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.82 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 46 53 0.03573220 0.04060072 0.03886182 3 -18.46012 284.2183 3 4 54 63 0.04129618 0.04755561 0.04512144 3 31.50465 206.0559 5 3 73 82 0.05521400 0.06147344 0.06043035 3 57.69910 129.4625 7 4 339 348 0.24303524 0.24929488 0.24686034 2 31.49329 210.0913 8 2 349 358 0.24999025 0.25624907 0.25381514 2 -18.33454 296.0566 10 2 636 645 0.45177373 0.45803333 0.45559887 3 -18.13613 291.9083 11 4 646 655 0.45872865 0.46498747 0.46255357 3 31.47580 208.8020 12 3 656 665 0.46568287 0.47195023 0.47090135 3 57.40510 127.8552 14 4 935 944 0.66050509 0.66676487 0.66433037 2 31.56359 211.8769 15 2 945 954 0.66746027 0.67371942 0.67128530 2 -17.52982 297.7024 16 5 955 964 0.67441502 0.68067763 0.67963210 NA 23.02753 188.5331 18 2 1234 1243 0.86920584 0.87546536 0.87303133 3 -16.70216 295.1976 19 4 1244 1253 0.87616088 0.88242083 0.87998652 3 31.55770 209.1090 20 3 1254 1262 0.88311591 0.88868053 0.88798494 3 56.93248 141.1545 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.243993 1.370627 -0.0119744155 -2.03607594 0.022919492 9.1458901 3 1.244012 1.370765 0.0054498571 -2.63665997 0.015376195 10.8513343 5 1.243960 1.370633 0.0019876724 1.71353296 0.012104684 3.7957451 7 1.242230 1.369167 -0.0062561130 -0.08961063 0.018036358 13.9539397 8 1.242252 1.369217 -0.0012339872 0.61989985 0.005526916 7.0569783 10 1.239052 1.365572 0.0063247750 -7.84869414 0.016961254 24.6411671 11 1.238739 1.365241 0.0023786890 -3.96007436 0.015743566 13.6326341 12 1.238977 1.365312 -0.0082995240 -1.30259098 0.021914325 1.7212560 14 1.235165 1.360787 -0.0050744720 -1.96186271 0.012888643 6.4715443 15 1.234932 1.360553 -0.0102292613 0.80913468 0.026488888 3.1679158 16 1.234371 1.360070 -0.0549939931 1.19169517 0.039111844 1.9071658 18 1.224700 1.349472 -0.0101375821 -0.45628363 0.025781316 4.7928742 19 1.224373 1.349009 -0.0009686223 0.77432375 0.014041184 3.6174194 20 1.223928 1.348601 0.0089895748 0.65828722 0.020626254 0.8695074 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.76 co2l1 = 0.415 co2l0 = 0.168" [1] "co2l0 = -144.13 co2l1 = 0.231" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "139 out of 325 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "186 out of 1213 1-min values rejected as stack air" [1] "168 out of 1195 Line 1 1-min values rejected as stack air" [1] "18 out of 18 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"