[1] "2025-04-29 19:52:09 MDT" [1] "1312" "131124" "d328" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131124a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:52:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.8, ave o2scale2 = 0.728" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "31 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.8, ave o2scale2 = 0.728" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "31 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:52:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:52:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:52:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:52:35 MDT" [1] "reading in recalculated plot titles" [1] "Removed 31 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1405 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:52:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.4" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.2" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.397 co2off = 372.22 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 221 230 0.1557710 0.1620302 0.1595962 2 31.39100 211.3026 1.244733 3 2 231 238 0.1627258 0.1689850 0.1667827 2 -21.17560 286.9512 1.245199 4 5 239 248 0.1696806 0.1759398 0.1748966 NA 26.02019 189.1685 1.245571 6 2 498 507 0.3644382 0.3707014 0.3682638 3 -20.64020 297.5049 1.247625 7 4 508 517 0.3713968 0.3776597 0.3752233 3 32.01050 207.9724 1.247819 8 3 518 526 0.3783552 0.3839187 0.3832233 3 59.52843 137.2025 1.247920 10 4 796 805 0.5733165 0.5795865 0.5771523 2 32.25775 211.2245 1.251017 11 2 806 815 0.5802819 0.5865415 0.5841072 2 -19.88654 292.9357 1.251250 13 2 1093 1102 0.7820378 0.7882975 0.7858633 3 -19.43466 294.6556 1.253480 14 4 1103 1112 0.7889929 0.7952523 0.7928179 3 32.32656 210.3915 1.253369 15 5 1113 1122 0.7959478 0.8022071 0.8011638 NA 27.17238 180.2534 1.253460 16 3 1123 1132 0.8029026 0.8091756 0.8081273 3 59.42201 145.1602 1.253458 18 4 1392 1401 0.9907205 0.9969797 0.9945455 2 32.12843 208.1347 1.252731 19 2 1402 1405 0.9976751 0.9997616 0.9994138 2 -19.31916 283.3092 1.252675 jfcv2 co2slp o2slp co2sd o2sd 2 1.368136 -0.0051653730 2.2786193 0.013991428 8.325427 3 1.368606 -0.0176030285 2.4057879 0.050576638 8.464948 4 1.369044 0.0160988394 -0.1243226 0.011402097 10.352593 6 1.370900 0.0116903893 -2.1421464 0.029267517 6.865321 7 1.371128 0.0100448835 0.4128907 0.027408818 3.651947 8 1.371305 -0.0043639899 1.8735841 0.011117122 2.185528 10 1.374450 -0.0086836351 -1.6938175 0.021643469 10.366625 11 1.374692 -0.0022116158 -0.9244724 0.011141387 3.861098 13 1.377363 0.0003359499 0.5687062 0.005668581 7.708408 14 1.377224 -0.0038228990 0.1643999 0.019284090 1.265168 15 1.377325 0.0184715231 -3.1650706 0.013081475 5.990903 16 1.377292 -0.0034811077 -5.6338381 0.010331527 10.305557 18 1.376382 -0.0049487134 -1.4388599 0.012580741 14.255669 19 1.376422 -0.0241472546 -8.7232807 0.017103145 6.178571 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.264 co2l1 = 0.395 co2l0 = 0.171" [1] "co2l0 = -148.69 co2l1 = 0.249" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "20 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1227 1-min values rejected as stack air" [1] "0 out of 1227 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"