[1] "2025-04-29 19:51:56 MDT" [1] "1312" "131123" "d327" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131123a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 41160 63 [1] 41160 [1] 41160 [1] "testing skipping spike filter" [1] 41160 [1] 41160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:51:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.807, ave o2scale2 = 0.735" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "59 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.807, ave o2scale2 = 0.735" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "59 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:51:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:51:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:52:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:52:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 59 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 12 row(s) with variable TFCELL" [1] "TEMP: 614 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:52:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.4" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.2" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.396 co2off = 386.6 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.81 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 241 250 0.7384171 0.7446766 0.7422422 2 30.01143 203.5485 1.238950 3 2 251 260 0.7453720 0.7516348 0.7491980 2 -21.82984 302.5448 1.239074 5 2 540 549 0.9470961 0.9533553 0.9509213 3 -21.62197 297.0882 1.241324 6 4 550 558 0.9547465 0.9603103 0.9582241 3 30.61697 208.3259 1.241748 7 3 559 568 0.9610058 0.9672657 0.9662226 3 58.23877 136.6580 1.241761 jfcv2 co2slp o2slp co2sd o2sd 2 1.361510 0.007147759 3.141811 0.022716700 9.898296 3 1.361708 -0.026139478 -2.886895 0.064830161 14.678966 5 1.364283 -0.024323063 -2.697807 0.060113277 10.493956 6 1.364702 -0.002554274 -1.685453 0.006679596 6.387108 7 1.364767 0.009475135 -1.617918 0.027092948 2.203127 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.915 co2l1 = 0.394 co2l0 = 0.224" [1] "co2l0 = -140.41 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "81 out of 95 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "14 out of 548 1-min values rejected as stack air" [1] "14 out of 548 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"