[1] "2025-04-29 19:49:44 MDT" [1] "1311" "131114" "d318" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131114a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:49:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.801, ave o2scale2 = 0.729" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "85 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.801, ave o2scale2 = 0.729" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "86 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:49:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:49:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:50:10 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:50:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 86 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1349 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:50:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.5" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.431 co2off = 378.3 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.23 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 186 191 0.1537749 0.1572558 0.1562108 2 31.17053 209.8052 1.243851 3 2 192 199 0.1614286 0.1669924 0.1651380 2 -16.69083 301.7500 1.244257 4 5 200 207 0.1676878 0.1725567 0.1722087 NA 22.95856 196.6441 1.244184 6 2 462 471 0.3624792 0.3687389 0.3663045 3 -16.84947 303.4231 1.247196 7 4 472 481 0.3694342 0.3756940 0.3732594 3 31.10674 207.1012 1.247436 8 3 482 490 0.3763894 0.3819606 0.3812650 3 56.11360 134.8363 1.247698 10 4 748 757 0.5712222 0.5774815 0.5750471 2 30.98929 206.9913 1.252217 11 2 758 767 0.5781778 0.5844383 0.5820030 2 -16.94402 297.3987 1.252379 13 2 1048 1057 0.7799155 0.7861784 0.7837432 3 -17.31345 296.9412 1.251931 14 4 1058 1067 0.7868738 0.7931376 0.7907028 3 30.93497 210.5427 1.251851 15 5 1068 1077 0.7938330 0.8000926 0.7990493 NA 25.98287 186.2781 1.251738 16 3 1078 1087 0.8007882 0.8070475 0.8060042 3 56.16421 135.7319 1.251728 18 4 1333 1342 0.9886157 0.9948785 0.9924442 2 30.94448 209.3093 1.254332 19 2 1343 1349 0.9955741 0.9997468 0.9983560 2 -17.27861 298.7727 1.254447 jfcv2 co2slp o2slp co2sd o2sd 2 1.366951 -0.0002344604 -0.5854790 0.004681941 1.856223 3 1.367620 0.0153087116 3.2995640 0.033743018 7.862106 4 1.367362 -0.2079541671 4.7607559 0.441676573 3.374218 6 1.370631 0.0101122440 -0.8900294 0.025465444 9.450988 7 1.370999 0.0044732055 0.3147626 0.018183939 5.960196 8 1.371187 -0.0014114258 5.3703561 0.005054760 5.383947 10 1.376048 0.0039605246 2.1060023 0.010904923 14.318761 11 1.376323 0.0027708197 0.8176287 0.009283647 7.724945 13 1.375585 0.0065604114 0.5026434 0.018128677 4.430785 14 1.375488 0.0080048628 1.0674014 0.020769435 5.156879 15 1.375427 0.0319467554 -0.4426407 0.022627417 2.684207 16 1.375357 -0.0035106077 -0.3823931 0.011849358 0.732200 18 1.378134 -0.0045473166 -0.6462259 0.012474301 3.756511 19 1.378331 -0.0146974133 -2.5853054 0.024544459 4.304064 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.622 co2l1 = 0.428 co2l0 = 0.151" [1] "co2l0 = -142.42 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "99 out of 135 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "36 out of 1174 1-min values rejected as stack air" [1] "36 out of 1174 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"