[1] "2025-04-29 19:48:18 MDT" [1] "1311" "131112" "d316" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131112a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:48:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.815, ave o2scale2 = 0.741" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "14 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.815, ave o2scale2 = 0.741" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:48:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:48:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:48:45 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:48:47 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1420 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:48:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.5" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.438 co2off = 385.02 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 93 102 0.06651042 0.07279592 0.07035840 2 31.49317 207.2459 3 2 103 112 0.07349155 0.07975107 0.07731645 2 -15.62417 297.7122 5 2 392 400 0.27594687 0.28151102 0.27942452 3 -15.68927 296.1581 6 4 401 410 0.28220645 0.28846586 0.28603154 3 31.44562 214.2824 7 5 411 420 0.28916183 0.29542054 0.29437756 NA 23.52694 173.9906 8 3 421 430 0.29611597 0.30237514 0.30133215 3 56.15341 138.9525 10 4 691 700 0.48397867 0.49023843 0.48780404 2 31.49875 201.2617 11 2 701 710 0.49093403 0.49719696 0.49476212 2 -15.72398 292.6525 13 2 990 999 0.69268791 0.69894792 0.69651382 3 -15.69695 297.7548 14 4 1000 1009 0.69964352 0.70590382 0.70346938 3 31.48070 210.4455 15 3 1010 1019 0.70659925 0.71286227 0.71181895 3 56.10470 137.0541 17 4 1281 1288 0.90140275 0.90766192 0.90569126 2 31.47391 216.1836 18 2 1289 1298 0.90835726 0.91461690 0.91218280 2 -15.65845 302.5206 19 5 1299 1308 0.91531250 0.92157187 0.92052887 NA 23.48222 190.2519 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.227019 1.349284 3.598203e-05 0.07941963 0.007198768 2.537186 3 1.227143 1.349430 1.990579e-04 -0.15466811 0.004250492 2.772633 5 1.227769 1.350166 -6.601411e-03 -4.40637621 0.015180156 13.185404 6 1.227719 1.350035 1.758642e-03 4.19495682 0.006571502 12.522151 7 1.227539 1.349875 -9.201765e-02 -4.21937438 0.065142212 5.874009 8 1.227661 1.350053 4.561615e-03 -1.44655894 0.015197252 1.911930 10 1.228425 1.350985 -1.091708e-02 -0.86129228 0.027360156 5.374585 11 1.228435 1.350967 -1.054567e-02 1.75931154 0.027716577 7.653730 13 1.227942 1.350466 -8.867737e-03 1.34863781 0.022080424 6.630430 14 1.227973 1.350495 4.038230e-03 0.62456095 0.014126807 1.968212 15 1.227963 1.350479 -2.189871e-03 1.14032221 0.006650368 1.740388 17 1.227132 1.349497 -9.515484e-03 1.63204619 0.024714898 9.768291 18 1.227125 1.349396 -7.270471e-03 -1.04308983 0.019013489 9.336902 19 1.226923 1.349158 -8.584450e-02 2.30082476 0.060766989 5.121009 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.176 co2l1 = 0.436 co2l0 = 0.147" [1] "co2l0 = -143.61 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "32 out of 55 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "23 out of 1231 1-min values rejected as stack air" [1] "23 out of 1231 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"