[1] "2025-04-29 19:47:45 MDT" [1] "1311" "131111" "d315" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131111a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:47:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.82, ave o2scale2 = 0.746" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.82, ave o2scale2 = 0.746" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:47:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:47:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:48:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:48:10 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1422 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:48:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.5" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.444 co2off = 381.04 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.07 minutes" [1] "Average Cal: 9.05 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.1 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 32 41 0.02323843 0.02949887 0.02706425 3 -14.63432 291.2154 3 4 42 51 0.03019444 0.03645408 0.03401996 3 31.82204 207.0285 4 5 52 61 0.03714936 0.04341224 0.04236922 NA 24.24212 186.0755 5 3 62 71 0.04410764 0.05036765 0.04932442 3 56.16739 133.9830 7 4 332 341 0.23191736 0.23818003 0.23574583 2 31.83702 205.4975 8 2 342 351 0.23887546 0.24513521 0.24270089 2 -14.71482 298.9924 10 2 631 640 0.44059945 0.44690810 0.44445622 3 -14.92140 296.5718 11 4 641 650 0.44760764 0.45390286 0.45145473 3 31.70634 209.1545 12 3 651 660 0.45460298 0.46089925 0.45984962 3 56.11916 135.9840 14 4 929 938 0.64911484 0.65540978 0.65296169 2 31.64292 207.1588 15 2 939 948 0.65611079 0.66242159 0.65996685 2 -15.19111 296.1702 16 5 949 958 0.66312280 0.66943472 0.66838302 NA 23.38869 186.0154 18 2 1223 1232 0.85764086 0.86394071 0.86149132 3 -15.48016 299.5714 19 4 1233 1242 0.86464062 0.87093860 0.86848828 3 31.51618 208.5069 20 3 1243 1252 0.87164034 0.87795897 0.87690715 3 56.16262 134.7058 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.217949 1.338811 -0.0129577634 0.995938575 0.031915546 7.394156 3 1.217891 1.338749 0.0030109374 -0.257201470 0.009349903 2.414432 4 1.217662 1.338489 -0.0814050275 -1.428758270 0.057629203 2.020383 5 1.217766 1.338558 -0.0015659737 -0.768166755 0.005353336 1.313608 7 1.217717 1.338484 -0.0053737743 0.007343736 0.013404080 1.536642 8 1.217822 1.338590 -0.0114485150 0.764123302 0.029499479 1.963346 10 1.219880 1.340653 0.0029260402 -0.147081865 0.009366242 1.569010 11 1.219876 1.340642 0.0002406571 -1.343767078 0.005301406 3.690023 12 1.219794 1.340562 0.0027242773 2.800194382 0.010540155 3.768618 14 1.221077 1.342017 -0.0006808071 0.517451430 0.009068917 2.707408 15 1.221110 1.342046 -0.0031983225 -0.526770192 0.008754447 5.566335 16 1.220919 1.341827 -0.0818271849 1.512675981 0.058424698 2.375486 18 1.223910 1.344944 -0.0050064370 -1.072352158 0.015653935 2.914084 19 1.224105 1.345155 0.0005252401 -0.627022492 0.017448599 1.972211 20 1.224353 1.345410 0.0012148540 0.339533462 0.014260860 1.294556 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.936 co2l1 = 0.439 co2l0 = 0.147" [1] "co2l0 = -142.34 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "88 out of 185 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "97 out of 1215 1-min values rejected as stack air" [1] "97 out of 1215 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"