[1] "2025-04-29 19:47:07 MDT" [1] "1311" "131110" "d314" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131110a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:47:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.743" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.743" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:47:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:47:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:47:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:47:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1433 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:47:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.5" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.446 co2off = 377.26 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.93 minutes" [1] "Shortest Cal: 8.03 minutes" [1] "Longest Cal: 9.09 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 270 279 0.1883234 0.1945824 0.1921485 3 -14.66213 287.2365 1.229214 3 4 280 289 0.1952785 0.2015417 0.1991040 3 31.97321 206.6558 1.229168 4 3 290 299 0.2022373 0.2085000 0.2074544 3 56.29366 130.6813 1.228823 6 4 569 578 0.3970122 0.4032749 0.4008409 2 32.09131 210.0885 1.225895 7 2 579 587 0.4039703 0.4095439 0.4074508 2 -14.02046 296.3660 1.225988 8 5 588 597 0.4109345 0.4172443 0.4161992 NA 26.11028 189.2095 1.225746 10 2 868 877 0.6058727 0.6121354 0.6097014 3 -14.20648 296.0993 1.222897 11 4 878 887 0.6128310 0.6190907 0.6166566 3 32.01856 205.8031 1.222760 12 3 888 897 0.6197860 0.6260462 0.6250029 3 56.20879 136.4708 1.222614 14 4 1168 1177 0.8145623 0.8208252 0.8183895 2 31.94612 205.4857 1.219834 15 2 1178 1187 0.8215208 0.8277815 0.8253474 2 -14.49105 299.2058 1.219685 jfcv2 co2slp o2slp co2sd o2sd 2 1.351794 0.005214826 -1.3612663 0.013066213 6.258342 3 1.351753 0.008905069 0.5539619 0.022538903 2.004970 4 1.351412 0.002159234 7.5746760 0.006274233 9.944806 6 1.348067 -0.005080191 1.0516901 0.013763589 4.120634 7 1.348087 -0.002989505 -0.8860859 0.011357858 3.474898 8 1.347331 -0.070712324 1.2181771 0.050071999 3.775692 10 1.344172 -0.003568353 0.3468319 0.009814572 5.604171 11 1.344040 0.003602079 -0.4145779 0.014783444 2.291637 12 1.343887 -0.002902184 3.6372724 0.011423022 4.712238 14 1.340978 -0.005518682 1.0300277 0.013727597 3.093398 15 1.340826 -0.007265809 0.2444414 0.020327529 1.429603 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.701 co2l1 = 0.443 co2l0 = 0.134" [1] "co2l0 = -142.9 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "237 out of 415 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "178 out of 1275 1-min values rejected as stack air" [1] "174 out of 1241 Line 1 1-min values rejected as stack air" [1] "4 out of 34 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"