[1] "2025-04-29 19:46:08 MDT" [1] "1311" "131108" "d312" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131108a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:46:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.808, ave o2scale2 = 0.735" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "50 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.808, ave o2scale2 = 0.735" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "50 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:46:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:46:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:46:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:46:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 50 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1386 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:46:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.438 co2off = 374.1 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.49 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 4 0.001284115 0.00337037 0.003022569 3 -15.40291 291.4488 2 4 5 14 0.004065972 0.01032526 0.007890914 3 31.96603 212.8504 3 3 15 22 0.011020833 0.01591473 0.015566102 3 56.77172 136.0121 5 4 246 255 0.205912037 0.21217130 0.209736766 2 32.00724 206.0468 6 2 256 265 0.212866811 0.21912569 0.216691587 2 -15.26279 293.8187 7 5 266 275 0.219822164 0.22608605 0.225043099 NA 25.70991 187.0461 10 2 546 555 0.414656250 0.42094907 0.418514703 3 -14.75658 295.1841 11 4 556 565 0.421644705 0.42790509 0.425470360 3 32.11930 203.0615 12 3 566 575 0.428600694 0.43486004 0.433816609 3 56.68818 136.6291 15 4 845 854 0.623371528 0.62963432 0.627198857 2 32.03001 203.4602 16 2 855 864 0.630329861 0.63659280 0.634157303 2 -15.14535 305.9022 18 2 1145 1154 0.832074363 0.83833383 0.835899743 3 -15.49841 295.0469 19 4 1155 1164 0.839029340 0.84528941 0.842854908 3 31.86196 202.9487 20 5 1165 1174 0.845984954 0.85224711 0.851202937 NA 25.60575 184.6982 21 3 1175 1184 0.852942477 0.85920200 0.858158630 3 56.60416 131.4356 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.231273 1.352632 -0.0044301165 -1.2098913 0.003137786 0.8569482 2 1.231370 1.352740 0.0044157017 -0.1083541 0.012654404 3.2047859 3 1.231311 1.352674 0.0047574687 2.5696797 0.009948049 1.8243818 5 1.236506 1.359549 0.0004167419 2.2207258 0.006561814 7.0350845 6 1.236821 1.359870 0.0007957485 1.7473406 0.006753384 5.1339177 7 1.236769 1.359813 -0.0664960040 0.3145721 0.047066795 1.6664338 10 1.238371 1.361545 0.0013931813 0.4778464 0.011657776 3.5211021 11 1.238442 1.361630 0.0040002414 -1.5927955 0.013197197 7.0057657 12 1.238483 1.361643 0.0044298939 -1.7427326 0.014777005 4.4535733 15 1.240901 1.364285 -0.0017775546 2.7906689 0.004855092 7.6707634 16 1.241057 1.364440 0.0005080797 2.7838569 0.010691647 9.6073785 18 1.241505 1.364851 0.0023313861 0.8120517 0.007562242 2.8354532 19 1.241487 1.364842 0.0068447032 -1.4373071 0.018959512 4.6998931 20 1.241369 1.364727 -0.0589238900 6.2787626 0.041719300 8.3665395 21 1.241369 1.364713 -0.0010290378 -1.2163708 0.004312039 1.7987752 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.962 co2l1 = 0.434 co2l0 = 0.144" [1] "co2l0 = -141.65 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "91 out of 180 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "89 out of 1185 1-min values rejected as stack air" [1] "88 out of 1047 Line 1 1-min values rejected as stack air" [1] "1 out of 138 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"