[1] "2025-04-29 19:45:34 MDT" [1] "1311" "131107" "d311" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131107a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:45:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.814, ave o2scale2 = 0.74" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "29 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.814, ave o2scale2 = 0.74" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "29 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:45:39 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:45:39 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:45:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:45:58 MDT" [1] "reading in recalculated plot titles" [1] "Removed 29 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1407 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:46:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.442 co2off = 386.8 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.51 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 233 242 0.1622794 0.1685384 0.1661045 3 -14.45505 294.6070 1.228926 3 4 243 252 0.1692339 0.1754934 0.1730595 3 32.42076 205.2904 1.228884 4 3 253 262 0.1761929 0.1824517 0.1814087 3 56.90495 128.7875 1.228820 6 4 533 542 0.3709872 0.3772465 0.3748121 2 32.42578 207.5011 1.229269 7 2 543 552 0.3779421 0.3842014 0.3817671 2 -14.27528 294.9008 1.229323 10 2 833 842 0.5797141 0.5859770 0.5835408 3 -14.52735 299.7393 1.230019 11 4 843 852 0.5866725 0.5929355 0.5905001 3 32.34669 206.6467 1.230086 12 5 853 862 0.5936308 0.5998908 0.5988476 NA 26.10053 188.8749 1.230000 13 3 863 872 0.6005861 0.6068461 0.6058026 3 56.80922 134.7181 1.230207 18 4 1129 1138 0.7884203 0.7946815 0.7922470 2 32.21073 205.7583 1.229593 19 2 1139 1148 0.7953764 0.8016363 0.7992021 2 -14.72235 304.0270 1.229645 21 2 1404 1407 0.9971111 0.9991977 0.9988500 1 -15.43328 299.1693 1.231268 jfcv2 co2slp o2slp co2sd o2sd 2 1.350943 0.0048218405 -0.09256566 0.014750709 6.5326578 3 1.350870 0.0034096821 1.77367129 0.018021268 6.1322058 4 1.350828 0.0039027381 6.73983583 0.013848730 10.7044191 6 1.351342 0.0004919835 -0.71514896 0.007283175 8.5312551 7 1.351401 -0.0037218971 1.69171527 0.013395178 4.8930147 10 1.352067 0.0066369794 1.65894090 0.017837402 5.1041544 11 1.352166 0.0047909078 0.36214002 0.014071723 6.0263888 12 1.352071 -0.0674725366 5.70706712 0.047773902 7.9136262 13 1.352269 -0.0030203428 -5.60814191 0.008795101 7.4123619 18 1.351487 0.0061704135 2.81447402 0.016890791 7.4556542 19 1.351454 0.0050768884 1.69718384 0.026667030 13.5936970 21 1.352632 -0.0086759321 -1.19091502 0.006142990 0.8432269 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.783 co2l1 = 0.439 co2l0 = 0.131" [1] "co2l0 = -140.46 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "132 out of 280 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "148 out of 1253 1-min values rejected as stack air" [1] "135 out of 1007 Line 1 1-min values rejected as stack air" [1] "13 out of 246 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"