[1] "2025-04-29 19:44:25 MDT" [1] "1311" "131105" "d309" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131105a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:44:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.743" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "188 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.743" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "187 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:44:29 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:44:29 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:44:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:44:49 MDT" [1] "reading in recalculated plot titles" [1] "Removed 187 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1249 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:44:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.441 co2off = 384.29 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.15 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 33 39 0.07521126 0.08147095 0.08007962 2 -13.56723 303.1625 3 4 40 46 0.08216635 0.08633906 0.08494796 2 33.02241 213.5656 7 4 233 240 0.28531600 0.29018516 0.28844611 2 32.94584 208.0198 8 2 241 250 0.29088064 0.29714008 0.29470552 2 -14.09792 295.6485 10 2 524 533 0.49265162 0.49891126 0.49647674 3 -14.03117 298.4868 11 4 534 543 0.49960666 0.50587037 0.50343335 3 32.94933 208.0144 12 3 544 553 0.50656597 0.51282558 0.51178213 3 57.44702 130.8260 14 4 824 833 0.70133455 0.70759465 0.70516031 2 32.78313 212.6652 15 2 834 843 0.70828999 0.71454977 0.71211531 2 -14.05679 299.0815 16 5 844 853 0.71524537 0.72150515 0.72046170 NA 26.23084 193.1487 18 2 1122 1131 0.91002083 0.91628087 0.91384652 3 -14.11540 293.8945 19 4 1132 1141 0.91697630 0.92323611 0.92080154 3 32.77214 201.7956 20 3 1142 1151 0.92393160 0.93019097 0.92914758 3 57.26306 133.1789 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.220161 1.341942 -0.039179323 0.4704518 0.062943799 3.898665 3 1.220509 1.342165 -0.001117287 2.7229081 0.007796308 6.318072 7 1.228365 1.350294 -0.002818209 0.5385613 0.009987942 1.979696 8 1.228544 1.350465 -0.010781849 -2.3017382 0.028113763 8.432727 10 1.229143 1.350979 0.004531800 -0.6852633 0.014928017 6.526394 11 1.229045 1.350860 0.003597044 -0.1212599 0.016986167 3.320479 12 1.228549 1.350380 -0.006655209 1.1070170 0.017088424 1.935234 14 1.222635 1.344027 0.004765271 2.4477534 0.016599283 8.525549 15 1.222432 1.343892 0.013561770 -0.5855678 0.034111653 4.852676 16 1.221896 1.343345 -0.060863956 0.3853822 0.043089319 2.655696 18 1.217832 1.339135 -0.004269004 1.7828490 0.012538821 5.628065 19 1.217831 1.339129 0.001219683 1.4440914 0.005000084 9.627780 20 1.217842 1.339142 0.005302477 0.3482412 0.015265873 5.223483 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.47 co2l1 = 0.439 co2l0 = 0.124" [1] "co2l0 = -143.37 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "19 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "1 out of 1061 1-min values rejected as stack air" [1] "1 out of 1061 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"