[1] "2025-04-29 19:43:48 MDT" [1] "1311" "131104" "d308" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131104a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:43:52 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.831, ave o2scale2 = 0.755" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "50 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.831, ave o2scale2 = 0.755" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "51 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:43:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:43:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:44:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:44:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 52 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1384 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:44:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.457 co2off = 375.66 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 44 53 0.03173438 0.03799381 0.03555950 2 33.92470 208.9635 3 2 54 63 0.03868932 0.04494887 0.04251431 2 -11.40577 296.2177 5 2 328 336 0.24042014 0.24667954 0.24409648 3 -11.05108 297.7928 6 4 337 346 0.24737500 0.25363461 0.25120046 3 33.99582 208.3630 7 3 347 356 0.25432995 0.26058964 0.25954616 3 57.44980 135.0546 9 4 627 636 0.44912659 0.45538634 0.45295197 2 33.91892 208.5563 10 2 637 646 0.45608174 0.46234144 0.45990692 2 -11.27364 293.2604 11 5 647 656 0.46303704 0.46929644 0.46825299 NA 27.08384 189.9406 13 2 927 936 0.65780556 0.66406551 0.66163126 3 -11.69216 299.9310 14 4 937 946 0.66476085 0.67102407 0.66858972 3 33.73491 204.3739 15 3 947 956 0.67171947 0.67797917 0.67693576 3 57.42786 132.8737 17 4 1226 1235 0.86649546 0.87275541 0.87032123 2 33.54373 208.2404 18 2 1236 1245 0.87345087 0.87971065 0.87727628 2 -12.33552 290.3179 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.211125 1.332910 -3.112610e-03 0.64278266 0.008717910 3.1471962 3 1.210451 1.332236 -2.913576e-03 0.43573526 0.007460891 8.8477483 5 1.201136 1.322048 -5.265818e-03 0.01741488 0.016026783 0.8623323 6 1.201073 1.322021 -3.129937e-03 0.96576916 0.013044414 5.5209526 7 1.200959 1.321887 1.349630e-06 2.21229766 0.009046738 3.1361986 9 1.200356 1.321126 -4.367751e-04 0.62213527 0.005588148 3.3781860 10 1.200468 1.321222 -3.775042e-03 -1.85722322 0.011820729 5.0653995 11 1.200390 1.321122 -7.131270e-02 1.92277310 0.050513941 4.4407380 13 1.202897 1.323763 -2.832616e-03 3.64701693 0.007918103 10.3649499 14 1.202961 1.323822 -2.732716e-03 1.07585766 0.012380362 4.9484402 15 1.203120 1.323982 9.226043e-04 2.53741384 0.004523716 3.4108114 17 1.208486 1.329459 -3.704148e-03 0.43824415 0.012879019 1.6493041 18 1.208702 1.329657 -2.096753e-03 -3.90998107 0.011234352 15.9308507 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.575 co2l1 = 0.453 co2l0 = 0.097" [1] "co2l0 = -144.19 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "79 out of 195 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "116 out of 1203 1-min values rejected as stack air" [1] "116 out of 1203 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"