[1] "2025-04-29 19:43:13 MDT" [1] "1311" "131103" "d307" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131103a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:43:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.75" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "72 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.75" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "73 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:43:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:43:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:43:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:43:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 73 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1363 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:43:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.449 co2off = 383.66 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.55 minutes" [1] "Shortest Cal: 5.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 5 7 [4,] 8 9 [5,] 10 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 3 1 10 0.002190162 0.008449797 0.007406641 1 57.85984 141.1825 3 4 276 285 0.196972425 0.203229890 0.200795801 2 34.16908 206.7526 4 2 286 295 0.203925752 0.210184606 0.207750521 2 -11.25691 309.1520 5 5 296 305 0.210879977 0.217139525 0.216096434 NA 26.90247 184.5452 7 2 518 525 0.405653935 0.411920544 0.409480411 3 -12.23766 297.7128 8 4 526 531 0.412616088 0.416100694 0.415054297 3 33.81031 206.2748 9 3 532 539 0.420969155 0.425837992 0.425490177 3 57.82720 135.4864 11 4 809 818 0.614348872 0.620612182 0.618176841 2 33.65047 207.3878 12 2 819 828 0.621307581 0.627567130 0.625132718 2 -12.71470 300.3822 14 2 1109 1118 0.823052488 0.829312211 0.826877944 3 -12.37775 294.8220 15 4 1119 1128 0.830007639 0.836267361 0.833832982 3 33.63591 211.5584 16 5 1129 1138 0.836962963 0.843222454 0.842179326 NA 27.28587 187.1015 17 3 1139 1148 0.843917853 0.850177546 0.849134230 3 57.76213 132.2673 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.193213 1.314204 0.0008796215 3.5211637 0.004310753 5.0732617 3 1.196559 1.317713 -0.0017175247 -0.6259945 0.006957199 4.1555329 4 1.196959 1.318146 -0.0049902184 3.2711353 0.012743474 14.3912302 5 1.197141 1.318321 -0.0651034081 0.8203765 0.046094523 2.5171528 7 1.215099 1.337233 0.0024593930 -1.5123748 0.012004020 6.3248371 8 1.215685 1.337857 0.0138398401 -0.7212425 0.018610103 1.9223086 9 1.216257 1.338485 0.0009216566 -1.6404569 0.003772933 1.1619598 11 1.222494 1.344996 -0.0050676001 -0.8170793 0.012978820 5.6273849 12 1.222956 1.345455 -0.0013482555 0.8856332 0.010494601 8.2131538 14 1.223042 1.345661 -0.0112770458 0.5729657 0.028226306 3.2229839 15 1.222987 1.345594 0.0004549366 1.7072752 0.010617434 6.0035639 16 1.222871 1.345405 -0.0564177242 2.3898869 0.039951533 3.9523468 17 1.222861 1.345433 -0.0018556935 -0.1569428 0.009525225 0.2228037 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.619 co2l1 = 0.448 co2l0 = 0.111" [1] "co2l0 = -140.54 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "70 out of 195 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "125 out of 1186 1-min values rejected as stack air" [1] "125 out of 1186 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"