[1] "2025-04-29 19:42:49 MDT" [1] "1311" "131102" "d306" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131102a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83299 63 [1] 83299 [1] 83299 [1] "testing skipping spike filter" [1] 83299 [1] 83299 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:42:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.75" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "109 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.75" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "111 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:42:54 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:42:54 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:43:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:43:05 MDT" [1] "reading in recalculated plot titles" [1] "Removed 111 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 7 row(s) with low FLSP" [1] "TEMP: 1268 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:43:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.448 co2off = 383.5 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.51 minutes" [1] "Average Cal: 7.52 minutes" [1] "Shortest Cal: 1.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 21 30 0.01522454 0.02148394 0.01904994 3 -13.65307 295.9379 3 4 31 40 0.02217943 0.02844213 0.02600733 3 33.75144 213.0034 4 3 41 50 0.02913773 0.03539705 0.03435403 3 58.58623 129.8444 6 4 317 326 0.22390324 0.23016314 0.22772845 2 33.87663 208.9488 7 2 327 335 0.23085854 0.23642202 0.23433564 2 -13.14007 292.9975 9 2 598 605 0.43264117 0.43750926 0.43577058 3 -12.25592 296.0486 10 4 606 613 0.43820486 0.44307694 0.44133791 3 34.01470 205.2730 11 3 614 621 0.45142344 0.45629181 0.45594413 3 58.15361 131.7477 16 4 962 970 0.77958571 0.78584592 0.78336172 2 34.32246 207.0261 17 2 971 980 0.78654129 0.79280101 0.79036638 2 -10.92202 300.0863 19 2 1252 1261 0.98827662 0.99453955 0.99210410 2 -10.97627 296.4837 20 4 1262 1268 0.99523576 0.99940856 0.99801752 2 34.26226 209.6776 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.234997 1.357629 -0.004434758 0.25182938 0.011478650 4.945204 3 1.234448 1.357116 -0.001244333 1.23430875 0.004771801 6.809219 4 1.234262 1.356970 0.004260791 -3.34472021 0.011141688 4.327874 6 1.229019 1.351173 -0.003470522 0.02889611 0.013759169 5.928264 7 1.228904 1.351081 -0.010560029 3.75107232 0.023979522 9.676026 9 1.215792 1.336355 0.001908331 0.35958933 0.007138766 2.936863 10 1.215293 1.335808 0.007960126 0.03827298 0.017410549 2.028509 11 1.213803 1.334350 -0.006006815 -4.55114560 0.011434762 3.222437 16 1.198210 1.319675 0.006320613 0.67831445 0.017372169 2.957078 17 1.198021 1.319461 0.012505661 -0.34697986 0.031475170 2.710439 19 1.194089 1.315175 -0.002146240 -1.95266660 0.011958864 5.635290 20 1.193607 1.314628 0.006084777 3.07680061 0.009877709 8.019749 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.75 co2l1 = 0.445 co2l0 = 0.116" [1] "co2l0 = -142.98 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1099 1-min values rejected as stack air" [1] "0 out of 1099 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"