[1] "2025-04-29 19:42:09 MDT" [1] "1311" "131101" "d305" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131101a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:42:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.808, ave o2scale2 = 0.735" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "103 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.808, ave o2scale2 = 0.735" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "103 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:42:14 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:42:14 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:42:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:42:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 103 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 16 row(s) with low FLSP" [1] "TEMP: 1317 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:42:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.433 co2off = 380.39 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 8.31 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 239 248 0.1806424 0.1869061 0.1844691 3 -14.06666 301.7829 1.241385 3 4 249 257 0.1876013 0.1931654 0.1910787 3 33.91150 212.1870 1.241257 4 3 258 265 0.2022065 0.2077701 0.2074224 3 59.00915 146.1205 1.240804 6 4 509 517 0.3900499 0.3956135 0.3935273 2 33.86822 207.4653 1.237955 7 2 518 526 0.3963090 0.4018753 0.3997881 2 -13.94544 296.0773 1.238149 9 2 784 793 0.5978717 0.6041310 0.6016970 3 -13.93503 298.4335 1.236612 10 4 794 803 0.6048265 0.6110857 0.6086518 3 33.80730 208.5341 1.236687 11 3 804 811 0.6131759 0.6180473 0.6176979 3 58.81497 134.8971 1.236302 13 4 1058 1067 0.8065649 0.8128245 0.8103903 2 33.81260 205.1709 1.236118 14 2 1068 1076 0.8135199 0.8190845 0.8169977 2 -13.81923 294.5789 1.236144 jfcv2 co2slp o2slp co2sd o2sd 2 1.363407 -0.0007631713 1.3932033 0.011774857 15.159601 3 1.363303 0.0106881677 1.0017309 0.025013980 13.724719 4 1.363269 -0.0029073912 -10.5305837 0.009504668 7.456175 6 1.360612 0.0027105826 0.7763851 0.007546803 7.597160 7 1.360788 -0.0053633970 1.0239891 0.014036365 4.952243 9 1.359011 -0.0023299777 -0.4089754 0.007738687 4.038974 10 1.359096 0.0074279488 -1.9551678 0.020433184 6.541241 11 1.358645 -0.0006429150 7.1624744 0.002971676 5.096288 13 1.358794 -0.0048366800 -1.7366839 0.014242124 5.534814 14 1.358920 -0.0047287017 -1.5628648 0.013464446 3.632709 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.336 co2l1 = 0.43 co2l0 = 0.131" [1] "co2l0 = -143.5 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "46 out of 135 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "89 out of 1193 1-min values rejected as stack air" [1] "89 out of 1193 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"