[1] "2025-04-29 19:40:53 MDT" [1] "1311" "131030" "d303" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131030a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:40:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.802, ave o2scale2 = 0.729" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "28 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.802, ave o2scale2 = 0.729" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "30 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:40:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:40:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:41:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:41:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 30 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 16 row(s) with low FLSP" [1] "TEMP: 1390 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:41:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.3" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.421 co2off = 380.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.55 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 127 136 0.09360764 0.0998669 0.09743273 3 -16.34637 302.4713 4 4 137 146 0.10056256 0.1068216 0.10438741 3 33.91830 208.1728 5 3 147 156 0.10751745 0.1137804 0.11273425 3 60.21605 136.9736 8 4 427 436 0.30228466 0.3085475 0.30611343 2 34.01156 216.2689 9 2 437 445 0.30924311 0.3148067 0.31272021 2 -15.62546 296.1985 11 2 714 723 0.51101273 0.5172762 0.51484106 3 -15.15849 293.3562 12 4 724 733 0.51797147 0.5242315 0.52179694 3 34.05030 209.4615 13 3 734 743 0.52492694 0.5311898 0.53014650 3 59.80453 135.8944 17 4 1013 1022 0.71970069 0.7259598 0.72352573 2 33.95002 209.6063 18 2 1023 1032 0.72665524 0.7329144 0.73048045 2 -14.95428 299.9679 21 2 1307 1316 0.92837743 0.9346367 0.93220288 2 -14.37918 298.2017 22 4 1317 1325 0.93533226 0.9408968 0.93881017 2 34.04146 211.3626 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.258487 1.383855 -1.511730e-03 1.5342784 0.016495685 6.483200 4 1.258116 1.383442 -2.428764e-03 0.8706652 0.010174616 4.719410 5 1.257973 1.383472 1.150650e-03 -4.7135435 0.008596189 6.259941 8 1.252425 1.377496 -1.333096e-03 2.6722288 0.007527776 11.646305 9 1.252356 1.377331 -2.944396e-03 0.8098069 0.009870497 4.310717 11 1.246735 1.371559 -1.043032e-02 1.6565471 0.028355001 4.711533 12 1.246492 1.371245 6.667665e-03 0.5602011 0.019837418 6.105903 13 1.246368 1.371060 -8.376792e-04 4.0548138 0.012027359 5.827595 17 1.240587 1.364900 -2.576758e-03 0.1963359 0.009319164 5.504513 18 1.240635 1.364890 2.960037e-05 -1.0522936 0.009286847 6.658929 21 1.233961 1.356730 -2.226712e-03 0.9001556 0.008767549 6.845187 22 1.233748 1.356447 6.473858e-03 0.7158850 0.015373597 7.957119 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.715 co2l1 = 0.417 co2l0 = 0.141" [1] "co2l0 = -144.96 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 344 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "299 out of 1214 1-min values rejected as stack air" [1] "266 out of 366 Line 1 1-min values rejected as stack air" [1] "33 out of 848 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"