[1] "2025-04-29 19:40:15 MDT" [1] "1311" "131029" "d302" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131029a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:40:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.719" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.719" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:40:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:40:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:40:39 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:40:41 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 14 row(s) with low FLSP" [1] "TEMP: 1409 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:40:48 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.404 co2off = 378.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.77 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 71 80 0.04995370 0.05621641 0.05378126 2 33.40833 205.3832 3 2 81 89 0.05691183 0.06247575 0.06038904 2 -18.90158 303.7547 6 2 359 368 0.25863206 0.26492080 0.26247035 3 -17.86125 296.7203 7 4 369 378 0.26561672 0.27187963 0.26944554 3 33.92648 206.2412 8 3 379 388 0.27257520 0.27883793 0.27779461 3 61.08518 133.8799 11 4 659 668 0.46756534 0.47382523 0.47139072 2 34.14427 199.7046 12 2 669 678 0.47452069 0.48078093 0.47834647 2 -17.30000 299.2093 14 2 959 968 0.67624852 0.68250810 0.68007372 3 -17.04477 297.3147 15 4 969 977 0.68320370 0.68877086 0.68668220 3 34.02111 219.7857 16 3 978 986 0.69781250 0.70337616 0.70268058 3 60.78197 109.7562 18 4 1245 1254 0.88492104 0.89117986 0.88874586 2 33.93291 203.2239 19 2 1255 1263 0.89187523 0.89813831 0.89555522 2 -16.78772 289.8985 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.270220 1.396004 -0.0015639121 0.3947375 0.006449992 4.030971 3 1.270259 1.395957 0.0006732815 -1.0240914 0.009490518 7.938286 6 1.266439 1.392271 -0.0040409114 1.1275869 0.011714946 5.617386 7 1.266252 1.392118 0.0009199658 1.1884029 0.010686573 5.089427 8 1.266263 1.392105 -0.0006313334 0.3714618 0.007906854 3.214849 11 1.265235 1.391235 0.0025218621 -0.4735475 0.009495649 16.924920 12 1.265191 1.391182 0.0032287788 -0.5420858 0.014511810 5.479140 14 1.262448 1.388016 -0.0072933951 -0.1268611 0.027098056 2.947499 15 1.262335 1.387855 0.0016125462 -6.6843484 0.008604422 22.014860 16 1.262272 1.387908 0.0028868819 -7.5346818 0.010416262 9.125788 18 1.261363 1.386785 -0.0076091899 0.4319091 0.019232831 10.023062 19 1.261273 1.386738 0.0003823340 -1.0357223 0.013416776 9.225066 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.359 co2l1 = 0.399 co2l0 = 0.159" [1] "co2l0 = -139.1 co2l1 = 0.21" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "205 out of 455 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "250 out of 1252 1-min values rejected as stack air" [1] "248 out of 934 Line 1 1-min values rejected as stack air" [1] "2 out of 318 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"