[1] "2025-04-29 19:38:12 MDT" [1] "1310" "131021" "d294" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131021a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:38:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.802, ave o2scale2 = 0.731" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "37 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.802, ave o2scale2 = 0.731" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:38:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:38:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:38:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:38:35 MDT" [1] "reading in recalculated plot titles" [1] "Removed 38 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1398 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:38:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.428 co2off = 378.6 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.8 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 206 215 0.1463538 0.1526134 0.1501789 2 29.93567 208.8949 1.244922 3 2 216 225 0.1533090 0.1595683 0.1571340 2 -18.34284 304.6589 1.244959 6 2 500 509 0.3550637 0.3613231 0.3588890 3 -18.36005 296.0280 1.245641 7 4 510 519 0.3620188 0.3682788 0.3658441 3 29.96947 205.9728 1.245952 8 3 520 529 0.3689741 0.3752453 0.3741976 3 55.23570 130.4935 1.246036 10 4 785 794 0.5637889 0.5700518 0.5676175 2 29.96360 204.2603 1.247707 11 2 795 804 0.5707471 0.5770065 0.5745724 2 -18.32363 295.4746 1.247691 14 4 1083 1091 0.7794638 0.7857256 0.7835396 2 30.60696 213.5084 1.249034 15 5 1092 1101 0.7864210 0.7926840 0.7916406 NA 24.15119 183.5438 1.248812 16 3 1102 1111 0.7933794 0.7996424 0.7985986 2 54.89598 135.3864 1.248172 18 4 1372 1381 0.9812329 0.9874930 0.9850588 2 29.90817 207.5581 1.248898 19 2 1382 1391 0.9881885 0.9944479 0.9920139 2 -18.54962 293.6184 1.248859 jfcv2 co2slp o2slp co2sd o2sd 2 1.366667 -0.0013177054 0.52332571 0.009230720 4.834183 3 1.366582 0.0034365023 1.67022734 0.017649236 16.492045 6 1.367388 0.0007232380 -0.31833228 0.018403538 4.824033 7 1.367702 0.0040292605 -0.67464982 0.012515660 3.826107 8 1.367789 -0.0002486462 -5.11302465 0.011782319 6.906893 10 1.369594 -0.0019114913 0.08795298 0.008866315 2.707498 11 1.369594 -0.0009570070 0.29936962 0.008642322 3.382283 14 1.371004 0.0205712523 -1.29007045 0.054287080 11.359953 15 1.370854 -0.0707570715 -2.12201090 0.050116193 4.208536 16 1.370180 -0.0041278816 0.35729247 0.011495765 2.352016 18 1.370616 -0.0075114631 -0.17998803 0.018931878 1.670017 19 1.370593 -0.0213745992 0.19830065 0.053395524 3.429760 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.126 co2l1 = 0.426 co2l0 = 0.165" [1] "co2l0 = -141.45 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "97 out of 200 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "103 out of 1213 1-min values rejected as stack air" [1] "103 out of 1213 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"