[1] "2025-04-29 19:37:27 MDT" [1] "1310" "131020" "d293" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131020a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:37:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.812, ave o2scale2 = 0.739" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.812, ave o2scale2 = 0.739" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:37:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:37:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:37:54 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:37:55 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1433 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:38:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.437 co2off = 381.97 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 147 156 0.1028398 0.1090995 0.1066650 3 -16.68235 292.0161 1.224014 3 4 157 166 0.1097951 0.1160544 0.1136200 3 30.30737 210.8335 1.224117 4 3 167 176 0.1167500 0.1230098 0.1219661 3 54.88727 135.0908 1.224239 6 4 446 455 0.3115301 0.3177894 0.3153553 2 30.32115 203.4606 1.227491 7 2 456 465 0.3184850 0.3247447 0.3223104 2 -16.77107 294.2951 1.227674 9 2 746 755 0.5202086 0.5264681 0.5240337 3 -17.21469 295.4253 1.233377 10 4 756 765 0.5271633 0.5334225 0.5309885 3 30.20465 208.8899 1.233462 11 5 766 775 0.5341181 0.5403782 0.5393350 NA 23.73703 181.0166 1.233471 12 3 776 785 0.5410736 0.5473332 0.5462899 3 55.03829 127.5771 1.233559 14 4 1045 1054 0.7288947 0.7351540 0.7327201 2 30.11006 210.2868 1.238403 15 2 1055 1064 0.7358495 0.7421091 0.7396747 2 -17.72686 297.5529 1.238503 17 2 1344 1353 0.9376238 0.9438835 0.9414494 3 -18.08873 295.6215 1.241192 18 4 1354 1363 0.9445788 0.9508380 0.9484041 3 30.01283 204.8367 1.241114 19 3 1364 1373 0.9515337 0.9577928 0.9567497 3 55.14747 132.0726 1.241073 jfcv2 co2slp o2slp co2sd o2sd 2 1.344715 -0.0003707165 2.6519981 0.010389240 7.464524 3 1.344813 0.0009425115 2.2088508 0.010520412 7.716897 4 1.344981 0.0081926415 1.3308813 0.023528354 2.835308 6 1.348579 -0.0060547148 -2.8837060 0.018740829 8.506350 7 1.348777 -0.0199545662 -0.6860271 0.049904769 5.340964 9 1.354998 -0.0005824653 0.7989963 0.011627256 4.573605 10 1.355079 0.0011094067 0.1049416 0.006973078 3.874802 11 1.355027 -0.0599800275 -0.8278714 0.042470601 3.292482 12 1.355085 0.0020364322 1.4412923 0.009311807 2.945586 14 1.359898 -0.0078041905 1.0482963 0.019247594 3.930135 15 1.360000 -0.0044222225 0.7699387 0.016889569 4.294388 17 1.362855 -0.0019708575 -0.3026397 0.007956280 3.744014 18 1.362835 -0.0028248511 0.9193678 0.009473927 7.413280 19 1.362781 -0.0038740769 -0.6825546 0.012242253 1.108305 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.823 co2l1 = 0.432 co2l0 = 0.16" [1] "co2l0 = -142.31 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "254 out of 761 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "507 out of 1251 1-min values rejected as stack air" [1] "507 out of 1251 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"