[1] "2025-04-29 19:36:45 MDT" [1] "1310" "131019" "d292" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131019a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85742 63 [1] 85742 [1] 85742 [1] "testing skipping spike filter" [1] 85742 [1] 85742 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:36:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.748" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "89 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.748" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "89 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:36:50 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:36:50 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:37:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:37:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 89 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1339 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:37:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.443 co2off = 377.8 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.73 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 85 94 0.05941898 0.06567824 0.06324406 2 30.34568 206.1982 3 2 95 104 0.06637384 0.07263319 0.07019879 2 -16.36009 299.9799 5 2 385 394 0.26813197 0.27439120 0.27195712 3 -16.28448 294.1839 6 4 395 404 0.27508686 0.28134609 0.27891211 3 30.37237 211.5969 7 5 405 414 0.28204167 0.28830104 0.28725799 NA 24.40819 186.2281 8 3 415 424 0.28899656 0.29525692 0.29421317 3 54.80072 134.8058 10 4 642 648 0.47684019 0.48310275 0.48171106 2 30.40116 202.9974 11 2 649 654 0.48379815 0.48727549 0.48623211 2 -16.36869 297.1322 13 2 889 898 0.68520553 0.69146432 0.68903039 3 -16.33934 285.2355 14 4 899 908 0.69215978 0.69842940 0.69599018 3 30.41305 198.5707 15 3 909 918 0.69912497 0.70538776 0.70434447 3 54.88709 141.4345 17 4 1189 1198 0.89414120 0.90040049 0.89796629 2 30.41148 211.0093 18 2 1199 1208 0.90109609 0.90735535 0.90492137 2 -16.44546 301.3415 19 5 1209 1218 0.90805101 0.91431134 0.91326800 NA 23.68087 190.2026 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.214888 1.335812 -0.0050753653 -0.8989271 0.017788265 3.277387 3 1.214973 1.335943 -0.0082980297 1.3456769 0.025648421 3.707618 5 1.213953 1.334735 -0.0094415195 0.3994766 0.023590085 3.837146 6 1.213861 1.334656 -0.0003030706 0.3931552 0.005216731 3.578311 7 1.213813 1.334596 -0.0742790562 -0.8236389 0.052591067 5.483331 8 1.213781 1.334560 -0.0051096960 1.0625507 0.015636103 1.569673 10 1.212311 1.332947 -0.0025078720 -5.0604481 0.004892620 8.330779 11 1.212489 1.333217 -0.0138646458 -11.7477723 0.021784515 15.314041 13 1.219996 1.340224 -0.0043481977 0.3649092 0.015945322 11.292780 14 1.219904 1.340223 -0.0041569352 -1.3571259 0.011385711 10.715042 15 1.220051 1.340405 0.0042494390 -0.4666963 0.018066869 2.978114 17 1.220920 1.341671 -0.0034312305 1.9695300 0.010087217 9.869334 18 1.220805 1.341553 -0.0102763852 -0.9600133 0.026532997 9.820459 19 1.220435 1.341126 -0.0633943428 1.9521242 0.044901281 3.594548 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.535 co2l1 = 0.44 co2l0 = 0.157" [1] "co2l0 = -142.76 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "42 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "8 out of 1154 1-min values rejected as stack air" [1] "8 out of 1154 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"