[1] "2025-04-29 19:36:10 MDT" [1] "1310" "131018" "d291" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131018a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:36:14 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.743" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.743" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:36:14 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:36:14 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:36:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:36:32 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 29 row(s) with low FLWTA" [1] "TEMP: 1394 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:36:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.443 co2off = 391.58 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.75 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 9 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 19 28 0.01521753 0.02147688 0.01904275 3 -16.84932 296.8148 3 4 29 35 0.02286811 0.02704138 0.02565032 3 30.36813 212.7180 5 3 43 52 0.03608660 0.04234618 0.04130313 3 55.08507 132.5963 8 4 313 322 0.22395544 0.23021528 0.22778070 2 30.43867 209.2307 9 2 323 332 0.23091076 0.23716994 0.23473561 2 -16.51483 296.1837 12 2 602 611 0.43279433 0.43905975 0.43662491 3 -15.77123 302.0303 13 4 612 621 0.43975515 0.44601736 0.44358240 3 30.65149 203.2126 14 3 622 626 0.44671296 0.44949647 0.45530068 3 55.03442 174.2497 21 2 891 900 0.64862972 0.65489285 0.65245878 1 -15.82282 295.3581 22 5 901 910 0.65558814 0.66185234 0.66080929 NA 24.18369 186.5263 24 2 1180 1189 0.85057396 0.85683730 0.85440307 3 -16.19494 298.1834 25 4 1190 1199 0.85753270 0.86379670 0.86136249 3 30.45460 207.0567 26 3 1200 1209 0.86449196 0.87076247 0.86971926 3 54.78610 132.8801 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.240694 1.363081 0.005073828 1.73017986 0.014504403 6.9447781 3 1.240527 1.362860 0.024441117 0.35599107 0.041353020 4.3385462 5 1.240254 1.362600 -0.005313161 5.09098432 0.016304046 7.3424112 8 1.234138 1.356065 -0.006620052 0.16667981 0.017692744 2.6612362 9 1.233680 1.355579 -0.007462933 0.01449245 0.021962624 3.3256293 12 1.224433 1.345805 -0.007367506 0.19412864 0.018360567 6.1399450 13 1.223871 1.345162 0.000901037 2.45352551 0.011176668 7.5246602 14 1.223390 1.344682 0.013260019 3.68596043 0.013703092 26.7635512 21 1.215289 1.336138 -0.005672474 0.25196650 0.015396198 3.2602790 22 1.215256 1.336135 -0.080767310 -1.69927866 0.057187261 2.3066703 24 1.214180 1.335038 0.005698921 0.24239715 0.014697090 2.2458936 25 1.214086 1.334947 -0.001939770 -0.83311475 0.011327409 2.6219728 26 1.214173 1.335048 0.002712006 0.20273056 0.009550263 0.8973362 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.453 co2l1 = 0.437 co2l0 = 0.157" [1] "co2l0 = -145.8 co2l1 = 0.234" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "43 out of 225 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "182 out of 1194 1-min values rejected as stack air" [1] "102 out of 809 Line 1 1-min values rejected as stack air" [1] "80 out of 385 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"