[1] "2025-04-29 19:35:07 MDT" [1] "1310" "131016" "d289" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131016a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:35:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.813, ave o2scale2 = 0.739" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "5 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.813, ave o2scale2 = 0.739" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "7 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:35:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:35:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:35:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:35:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 211 row(s) with low FLWTA" [1] "TEMP: 1218 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:35:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.443 co2off = 381.46 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 193 202 0.1367616 0.1430209 0.1405866 2 30.30221 203.8413 1.221936 3 2 203 212 0.1437164 0.1499758 0.1475419 2 -16.13654 299.8648 1.222195 4 5 213 222 0.1506713 0.1569306 0.1558876 NA 23.96312 187.7782 1.222375 6 2 493 502 0.3454607 0.3517204 0.3492859 3 -16.27638 296.5710 1.228895 7 4 503 512 0.3524159 0.3586759 0.3562411 3 30.28037 204.9897 1.229022 8 3 513 522 0.3593714 0.3656322 0.3645877 3 54.64059 134.5434 1.229233 10 4 784 793 0.5541586 0.5604179 0.5579837 2 30.46281 212.3342 1.233477 11 2 794 803 0.5611134 0.5673728 0.5649384 2 -15.99583 292.7684 1.233605 13 2 1079 1088 0.7628515 0.7691102 0.7666763 3 -16.21069 300.5438 1.236721 14 4 1089 1098 0.7698056 0.7760652 0.7736312 3 30.53832 211.5651 1.236773 16 3 1106 1115 0.7837155 0.7899745 0.7889314 3 55.04752 136.5991 1.236958 18 4 1178 1187 0.9715402 0.9777997 0.9753653 2 30.41020 211.5697 1.239169 19 2 1188 1197 0.9784952 0.9847548 0.9823203 2 -16.53539 293.9266 1.239358 jfcv2 co2slp o2slp co2sd o2sd 2 1.344083 3.512301e-05 -0.83364643 0.007585520 12.667448 3 1.344411 -1.094493e-02 1.17123762 0.027906851 5.690607 4 1.344591 -4.343846e-02 2.45069263 0.030759145 3.662840 6 1.351167 2.020097e-03 0.36239352 0.013850888 2.407040 7 1.351244 6.792100e-03 -0.14912320 0.019471374 1.723172 8 1.351471 -1.360316e-03 2.04483438 0.008781063 4.785691 10 1.355948 1.546101e-02 3.29384661 0.039158446 21.804035 11 1.356106 -1.820150e-02 -0.24895868 0.058639807 11.306449 13 1.359240 -1.552697e-03 0.43680338 0.006022558 5.042942 14 1.359344 1.102578e-02 -0.04010089 0.027132003 4.244182 16 1.359485 3.422482e-03 3.27190360 0.011573655 5.860377 18 1.361754 -7.936745e-03 -1.10868259 0.021512293 7.004743 19 1.361970 -3.440656e-03 0.82187032 0.019332348 8.718295 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.496 co2l1 = 0.441 co2l0 = 0.157" [1] "co2l0 = -144.24 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1029 1-min values rejected as stack air" [1] "0 out of 1029 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"