[1] "2025-04-29 19:34:34 MDT" [1] "1310" "131015" "d288" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131015a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:34:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.747" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.747" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:34:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:34:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:34:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:34:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1432 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:35:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.444 co2off = 381.66 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 133 142 0.09337729 0.09963649 0.09720218 3 -16.49010 296.2833 3 4 143 152 0.10033183 0.10659144 0.10415727 3 30.15520 206.8777 4 3 153 162 0.10728704 0.11354630 0.11250311 3 54.50373 135.6613 6 4 433 442 0.30205333 0.30831296 0.30587889 2 30.09409 202.9529 7 2 443 452 0.30900833 0.31527153 0.31283735 2 -16.61035 300.4686 12 2 733 742 0.51073568 0.51699867 0.51456200 3 -16.77680 295.7923 13 4 743 752 0.51769395 0.52395278 0.52151885 3 30.10376 208.5974 14 5 753 762 0.52464829 0.53090796 0.52986487 NA 24.49806 188.4710 15 3 763 772 0.53160333 0.53786609 0.53682314 3 54.57123 133.8880 18 4 1032 1041 0.71940871 0.72566869 0.72323450 2 30.17798 208.6453 19 2 1042 1051 0.72636400 0.73262671 0.73019144 2 -16.44172 296.2522 23 2 1329 1338 0.92801794 0.93428128 0.93184418 3 -16.21163 294.4248 24 4 1339 1348 0.93497688 0.94123628 0.93880209 3 30.15523 206.1901 25 3 1349 1358 0.94193174 0.94819109 0.94714785 3 54.49066 133.9173 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.217861 1.340712 0.0087079311 -0.12570370 0.021656999 1.914652 3 1.218035 1.340932 0.0072018158 0.98774399 0.018158357 4.380424 4 1.218120 1.341019 -0.0047986802 0.10056443 0.013886254 2.251073 6 1.220920 1.343530 0.0070262264 -0.06369924 0.020884620 3.572394 7 1.220911 1.343545 0.0032696678 0.11203014 0.014996724 3.861657 12 1.218798 1.341188 -0.0062116670 0.73223849 0.030852250 5.222094 13 1.218781 1.341202 0.0056995576 1.16730276 0.017777030 3.930951 14 1.218690 1.341116 -0.1159655474 -2.55576697 0.082112775 3.663074 15 1.218750 1.341201 -0.0007884762 -2.33555154 0.004722304 3.114808 18 1.214638 1.336953 -0.0073691509 -0.90454684 0.018487536 4.475342 19 1.214951 1.337293 -0.0125943558 2.19537405 0.032372880 5.834766 23 1.213797 1.335751 -0.0114876665 -1.26466202 0.029356690 5.667784 24 1.213751 1.335688 -0.0022290412 -1.29547166 0.014154550 4.706174 25 1.213950 1.335945 0.0035775645 0.86449326 0.011003243 1.176698 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.61 co2l1 = 0.44 co2l0 = 0.155" [1] "co2l0 = -141.97 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "79 out of 280 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "201 out of 1238 1-min values rejected as stack air" [1] "92 out of 732 Line 1 1-min values rejected as stack air" [1] "109 out of 506 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"