[1] "2025-04-29 19:34:00 MDT" [1] "1310" "131014" "d287" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131014a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:34:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.758" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "19 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.758" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "19 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:34:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:34:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:34:24 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:34:25 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1417 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:34:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.8" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.453 co2off = 381.16 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.73 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 69 76 0.05128475 0.05615741 0.05441789 2 30.43099 210.9882 3 2 77 86 0.05685292 0.06311574 0.06068122 2 -15.16191 294.4870 5 2 367 376 0.25858145 0.26485593 0.26241080 3 -15.11121 299.0993 6 4 377 386 0.26555645 0.27181834 0.26938393 3 30.51792 207.1719 7 5 387 396 0.27251392 0.27877321 0.27773004 NA 24.25966 188.3379 8 3 397 406 0.27946881 0.28572873 0.28468560 3 54.28227 136.8917 13 4 666 675 0.46728582 0.47354470 0.47111059 2 30.53661 206.9804 14 2 676 685 0.47424065 0.48049980 0.47806561 2 -15.06040 295.8788 17 2 965 974 0.67597358 0.68223634 0.67980243 3 -15.08702 295.4753 18 4 975 984 0.68293174 0.68919106 0.68675720 3 30.43116 206.1147 19 3 985 994 0.68988657 0.69614598 0.69510304 3 54.27618 128.4368 21 4 1263 1272 0.88468984 0.89094907 0.88851506 2 30.42030 208.6313 22 2 1273 1280 0.89303594 0.89790420 0.89616564 2 -15.61635 300.2973 23 5 1281 1290 0.89859957 0.90485891 0.90381570 NA 23.62306 184.6189 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.198962 1.322074 -4.597167e-05 -6.262477621 0.005575395 13.466622 3 1.198530 1.321511 6.775652e-03 -1.100515088 0.018713566 4.195821 5 1.194088 1.316553 -1.583951e-03 -0.277769829 0.005904177 6.338883 6 1.193960 1.316448 7.115807e-03 -0.160683561 0.018962185 3.161077 7 1.194295 1.316793 -5.447398e-02 -0.918313013 0.038581514 2.310897 8 1.194393 1.316904 -1.278583e-03 -1.147283386 0.010184511 2.002954 13 1.192175 1.314402 -7.086113e-03 -1.055674645 0.017932343 6.850764 14 1.192219 1.314470 -2.006201e-02 0.842473117 0.049795138 2.722945 17 1.195885 1.318359 -1.018981e-02 -1.643367540 0.025744298 7.066510 18 1.196005 1.318430 8.644068e-04 1.763252834 0.010955620 5.358634 19 1.196214 1.318578 3.315735e-03 -4.973203698 0.008622893 6.577981 21 1.203462 1.325568 2.860508e-03 -0.327830772 0.009531477 2.746770 22 1.204139 1.326240 -1.041755e-02 0.002388583 0.020790460 6.032367 23 1.204285 1.326410 -7.800474e-02 -3.508462036 0.055242717 4.746890 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.186 co2l1 = 0.45 co2l0 = 0.141" [1] "co2l0 = -143.09 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "59 out of 390 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "331 out of 1221 1-min values rejected as stack air" [1] "257 out of 1070 Line 1 1-min values rejected as stack air" [1] "74 out of 151 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"