[1] "2025-04-29 19:32:14 MDT" [1] "1310" "131011" "d284" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131011a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:32:18 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.813, ave o2scale2 = 0.738" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "44 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.813, ave o2scale2 = 0.738" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "45 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:32:19 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:32:19 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:32:39 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:32:40 MDT" [1] "reading in recalculated plot titles" [1] "Removed 45 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1391 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:32:45 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.8" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.437 co2off = 381.99 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 173 182 0.1282403 0.1345000 0.1320659 2 29.88963 207.3764 1.229300 3 2 183 192 0.1351956 0.1414551 0.1390208 2 -17.27734 291.2762 1.229147 4 5 193 202 0.1421505 0.1484097 0.1473666 NA 23.20956 188.8126 1.228764 8 2 446 455 0.3369398 0.3431999 0.3407656 3 -16.84875 297.8070 1.222884 9 4 456 465 0.3438952 0.3501584 0.3477241 3 29.99378 208.3041 1.222816 10 3 466 474 0.3508538 0.3571134 0.3561860 3 54.51308 137.9256 1.222674 12 4 745 754 0.5456320 0.5518912 0.5494571 2 29.82294 209.2986 1.232102 13 2 755 764 0.5525868 0.5588495 0.5564144 2 -17.46359 296.7991 1.232449 15 2 1042 1051 0.7543207 0.7605833 0.7581486 3 -17.65968 297.2062 1.234984 16 4 1052 1061 0.7612790 0.7675422 0.7651076 3 29.77237 208.1453 1.234817 17 5 1062 1071 0.7682376 0.7744977 0.7734543 NA 23.21044 188.7540 1.234691 18 3 1072 1081 0.7751931 0.7814519 0.7804088 3 54.63296 128.5121 1.234566 20 4 1339 1348 0.9631574 0.9694175 0.9669828 2 29.84320 203.5232 1.230570 21 2 1349 1358 0.9701128 0.9763719 0.9739379 2 -17.43957 295.4773 1.230453 jfcv2 co2slp o2slp co2sd o2sd 2 1.353223 -0.0006293133 0.43784475 0.008218652 1.9020735 3 1.353073 -0.0027735667 -0.94331707 0.008301781 3.5523911 4 1.352651 -0.0642785821 -2.10349852 0.045519999 3.5469787 8 1.346932 -0.0013207775 -3.18668436 0.006619860 8.7538664 9 1.346832 0.0020503851 -2.17022854 0.008466188 8.7990779 10 1.346739 0.0006801798 3.90248710 0.002736450 6.3190348 12 1.356510 0.0042365543 0.52266462 0.011754938 2.5334723 13 1.356847 0.0010081714 -0.28729852 0.008506366 1.6824116 15 1.359485 -0.0059099994 1.91795216 0.015334275 6.7221804 16 1.359316 0.0077905494 1.12460823 0.019370679 6.4337423 17 1.359146 -0.0565307820 0.04397754 0.040039921 0.2821317 18 1.359029 0.0018908409 -2.89341556 0.010421954 3.8467213 20 1.354714 -0.0040033165 -2.14249304 0.013740206 5.7460112 21 1.354624 -0.0037928296 -0.65313513 0.014898445 3.9627160 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.891 co2l1 = 0.435 co2l0 = 0.165" [1] "co2l0 = -143.01 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 165 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "147 out of 1196 1-min values rejected as stack air" [1] "109 out of 1144 Line 1 1-min values rejected as stack air" [1] "38 out of 52 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"